Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

68452092 .. 68453667

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG505800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGACCAAAAAGAGTGGTCATGGTGAGCTTAGGGTTGGAGAGGTCTGGTTGCTGACGTGCGCTTGGGATGTTCTTGCCACTCTGCTTACCTCAGCCTTGCTGTCTTTAGCTCAGGATCCTTTCCAGCTCTCAACTTGTGGACCAAAAAACCGAGGAGCCAATGAGAATGATTATTCCTACTCGGAAGCAGTTGATGGTGATGAAGAAAAGAACAATGATGGTGGCTTTGGGGACCCCGAAGAGGAGCCATCTTCTGAAGATGAAGAAGGAGCTGGGAACAATTCTAATGGTAAAAGCAACAACAGTTCCAAAGCCGGGGCTGGAGGCGATGGGGGTGAAGAAGATGAAGAGGAGGACGATATCAACAACCGTGATGATAATGATGATGGCGAAGTAGATGGAGATGAGGACAAGGACGACGATGAAGATGAAGACAACGAGGACGAGGATGAAGGTGAGGACGAGGATGAGGAAGAAATTGTAGAAGAAGATGAACCTGATGATGAAGAAGACGAAGAAGAAGAGGCCCTTCAGCCCCCAAAGAAGCGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.37

Weight (kDa)

4.05

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	113, 126
AcuI	CTGAAG	2 cut(s)	279, 518
AfiI	CCNNNNNNNGG	2 cut(s)	244, 318
AjiI	CACGTC	1 cut(s)	60
AluBI	AGCT	4 cut(s)	31, 113, 130, 275
AluI	AGCT	4 cut(s)	31, 113, 130, 275
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	143, 235, 529
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	4 cut(s)	38, 212, 350, 470
AvaII	GGWCC	2 cut(s)	143, 235
BamHI	GGATCC	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	441, 519
BbvCI	CCTCAGC	1 cut(s)	94
BccI	CCATC	6 cut(s)	191, 215, 259, 326, 383, 395
BcnI	CCSGG	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	2 cut(s)	143, 235
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	143, 235, 529
BmiI	GGNNCC	5 cut(s)	120, 160, 236, 237, 249
BmrFI	CCNGG	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	441, 519
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	3 cut(s)	32, 94, 114
BpuMI	CCSGG	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	154, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 318
BseDI	CCNNGG	2 cut(s)	154, 318
BseGI	GGATG	3 cut(s)	76, 457, 475
BseLI	CCNNNNNNNGG	2 cut(s)	244, 318
BseMII	CTCAG	2 cut(s)	108, 128
BseRI	GAGGAG	3 cut(s)	171, 260, 368
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	244, 318
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	2 cut(s)	107, 127
BspLI	GGNNCC	5 cut(s)	120, 160, 236, 237, 249
BspPI	GGATC	2 cut(s)	113, 126
BssECI	CCNNGG	2 cut(s)	154, 318
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	308, 374
Bst6I	CTCTTC	3 cut(s)	237, 345, 519
BstDEI	CTNAG	3 cut(s)	32, 94, 114
BstF5I	GGATG	3 cut(s)	76, 457, 475
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	317
BstV2I	GAAGAC	2 cut(s)	441, 519
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	76, 457, 475
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	143, 235, 529
CspCI	CAANNNNNGTGG	3 cut(s)	33, 205, 240
CviAII	CATG	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	32, 94, 114
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	237, 345, 519
EarI	CTCTTC	3 cut(s)	237, 345, 519
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	143, 235
Eco57I	CTGAAG	2 cut(s)	279, 518
EcoO109I	RGGNCCY	2 cut(s)	235, 529
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	1 cut(s)	26
FaiI	YATR	1 cut(s)	24
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	22
FokI	GGATG	3 cut(s)	83, 464, 482
GlaI	GCGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	4 cut(s)	38, 212, 350, 470
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	187, 259
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	263, 449, 542
HpyCH4III	ACNGT	2 cut(s)	308, 374
HpyCH4IV	ACGT	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	32, 94, 114
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	63
KflI	GGGWCCC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	158, 247, 272
LpnPI	CCDG	7 cut(s)	34, 101, 140, 261, 309, 331, 513
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	283, 480
MmeI	TCCRAC	1 cut(s)	19
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	319
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	5 cut(s)	120, 160, 236, 237, 249
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	5 cut(s)	120, 160, 236, 237, 249
PspPI	GGNCC	3 cut(s)	143, 235, 529
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	3 cut(s)	143, 235, 529
ScrFI	CCNGG	1 cut(s)	319
SetI	ASST	9 cut(s)	33, 48, 62, 95, 115, 132, 277, 460, 502
SinI	GGWCC	2 cut(s)	143, 235
Sse9I	AATT	2 cut(s)	283, 480
SsiI	CCGC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	308, 374
TaiI	ACGT	1 cut(s)	62
TasI	AATT	2 cut(s)	283, 480
TspDTI	ATGAA	8 cut(s)	219, 279, 363, 441, 447, 468, 510, 522
VpaK11BI	GGWCC	2 cut(s)	143, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.