Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

68456928 .. 68459040

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG505900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTCCCCCCATTGGCTAGACAGGGTTCTAATTACAATCTGACTCCAGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACTAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTGCTGCAAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGCACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTCTCAATCTCAATTCCGCTGCAGCCAATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCTTAAATGCTCATCCAATGATGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGGACTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCGGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTTATACCGATCAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTAAATACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

330

Amino Acids

36.95

Weight (kDa)

7.91

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	257 - 302	2.8e-09	Basic region leucine zipper
bZIP_1	PF00170	259 - 302	2.3e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	312, 485
AcsI	RAATTY	2 cut(s)	256, 580
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	98, 130, 262, 268, 586, 933
AjnI	CCWGG	1 cut(s)	890
AloI	GAACNNNNNNTCC	4 cut(s)	32, 33, 64, 65
AluBI	AGCT	4 cut(s)	196, 500, 623, 983
AluI	AGCT	4 cut(s)	196, 500, 623, 983
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	312, 485
AlwNI	CAGNNNCTG	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	256, 580
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	324, 867
AspLEI	GCGC	2 cut(s)	738, 972
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	892
BclI	TGATCA	3 cut(s)	181, 334, 792
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	2 cut(s)	63, 446
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	4 cut(s)	391, 471, 704, 981
BpmI	CTGGAG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	892
BseGI	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	566, 636, 725
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	790
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	274
Bsp143I	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	565, 637, 724
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	312, 485
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Bst2UI	CCWGG	1 cut(s)	892
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	619, 779
BstAPI	GCANNNNNTGC	2 cut(s)	199, 722
BstC8I	GCNNGC	4 cut(s)	122, 516, 681, 837
BstDEI	CTNAG	4 cut(s)	552, 645, 711, 965
BstF5I	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BstHHI	GCGC	2 cut(s)	738, 972
BstKTI	GATC	6 cut(s)	184, 307, 337, 493, 795, 850
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
BstNI	CCWGG	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	1 cut(s)	363
BtsCI	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	4 cut(s)	122, 516, 681, 837
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	738, 972
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	3 cut(s)	332, 722, 949
CviJI	RGCY	9 cut(s)	62, 124, 196, 368, 500, 623, 839, 895, 983
CviKI_1	RGCY	9 cut(s)	62, 124, 196, 368, 500, 623, 839, 895, 983
DdeI	CTNAG	4 cut(s)	552, 645, 711, 965
DpnI	GATC	6 cut(s)	183, 306, 336, 492, 794, 849
DpnII	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Eam1104I	CTCTTC	2 cut(s)	619, 779
EarI	CTCTTC	2 cut(s)	619, 779
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	890
EcoRV	GATATC	1 cut(s)	174
FaeI	CATG	3 cut(s)	335, 725, 952
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	3 cut(s)	331, 721, 948
FbaI	TGATCA	3 cut(s)	181, 334, 792
FokI	GGATG	6 cut(s)	17, 164, 327, 459, 761, 802
FspBI	CTAG	2 cut(s)	63, 446
GlaI	GCGC	2 cut(s)	737, 971
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	738, 972
Hin1II	CATG	3 cut(s)	335, 725, 952
Hin6I	GCGC	2 cut(s)	736, 970
HinP1I	GCGC	2 cut(s)	736, 970
HinfI	GANTC	9 cut(s)	88, 374, 410, 575, 596, 628, 649, 707, 806
Hpy188I	TCNGA	4 cut(s)	87, 646, 706, 748
Hpy188III	TCNNGA	4 cut(s)	24, 185, 332, 632
HpyAV	CCTTC	5 cut(s)	182, 219, 231, 310, 751
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	202, 272, 365, 382
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
HpyF3I	CTNAG	4 cut(s)	552, 645, 711, 965
Hsp92II	CATG	3 cut(s)	335, 725, 952
HspAI	GCGC	2 cut(s)	736, 970
Ksp22I	TGATCA	3 cut(s)	181, 334, 792
Kzo9I	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
LweI	GCATC	4 cut(s)	391, 471, 704, 981
MaeI	CTAG	2 cut(s)	63, 446
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	6 cut(s)	183, 306, 336, 492, 794, 849
MboI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
MboII	GAAGA	8 cut(s)	204, 207, 216, 304, 606, 693, 796, 921
MlyI	GAGTC	5 cut(s)	82, 569, 605, 716, 815
MmeI	TCCRAC	3 cut(s)	518, 552, 834
MnlI	CCTC	8 cut(s)	31, 238, 354, 723, 768, 771, 780, 904
MroXI	GAANNNNTTC	2 cut(s)	324, 867
MseI	TTAA	3 cut(s)	162, 278, 464
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	3 cut(s)	196, 362, 500
MspR9I	CCNGG	1 cut(s)	892
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	892
MwoI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
NdeII	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
NlaIII	CATG	3 cut(s)	335, 725, 952
NlaIV	GGNNCC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	331
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	2 cut(s)	324, 867
PfeI	GAWTC	4 cut(s)	374, 410, 628, 649
PleI	GAGTC	5 cut(s)	82, 569, 604, 715, 814
PpsI	GAGTC	5 cut(s)	82, 569, 604, 715, 814
PshBI	ATTAAT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	890
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	196, 500
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	162, 278, 464
Sau3AI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
SchI	GAGTC	5 cut(s)	82, 569, 605, 716, 815
ScrFI	CCNGG	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	391, 471, 704, 981
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	63, 446
StyD4I	CCNGG	1 cut(s)	890
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	451, 578
TfiI	GAWTC	4 cut(s)	374, 410, 628, 649
Tru1I	TTAA	3 cut(s)	162, 278, 464
Tru9I	TTAA	3 cut(s)	162, 278, 464
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	6 cut(s)	317, 387, 606, 641, 765, 770
TspRI	CASTG	1 cut(s)	237
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	2 cut(s)	256, 580
XmnI	GAANNNNTTC	2 cut(s)	324, 867
XspI	CTAG	2 cut(s)	63, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.