Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

3765941 .. 3767742

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGCTGTATCACTGCCCATGCTGCCCCCATTGGTCCTACTACATTCATTTCCAGCTTCTCGGGCAATATCTCTCTCTCTCTCTCTCTTCTCTCTCAGACGCACACGCAGAAAGAGAAAAAGTTCAGATCTCTAAGCAAACCAAACCAACCAAAGACAAAGCTCAGTACGACTCTCTCTGCTCGGTCTCCACCTTCAGCTTAAACTTCAGGGGATTTTGTTCTTGTACGTTGAGTGCGTCCGTACAAATGGAGACCAAAAAGAGTGGTCATGGTGAGGTTAGGGTTGGAGAGGTCTGGTTGCTGACGTGCGCTTGGGATGTTCTTGCCACTCTGCTTACCTCAGCCTTGCTTTCTTTAGCTCAGGATCCTCTCCAGCTCTCAACTTGTGGACCCAAAAACCAAGGAGCCAATGAGAATGAATATTCCTACTCGGAAGCAGTTGATGGTGATGAAGAAAAGAACAATGATGGTGGCTCTGGGGACCCCGAAGAGGAGCCATCTTCTGAAGACGAAGAAGGAGCTGGGAACAACTCTAATGGTAAAAGCAACAACAGTACCAAAGCCGGGGCTGGAGGCGATGATGGGGGTGAAGAAAATGAAGAGGAGGACGATATCAACAACCGTGATGATAATGATGATGGCGAAGTAGATGGAGATGAGGACAAGGATGATGATGAAGATGAAGACAACGAGGACGAGGATGAAGGTGAGGACAAGGATGAGGAAGAAATTGTAGAAGAAGATGAACCTGATGATGAAGAAGACGAAGAAGAAGAGGCCCTTCAGCCCCCAAAGAAGCGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.77

Weight (kDa)

4.05

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	802
AclWI	GGATC	2 cut(s)	362, 375
AcuI	CTGAAG	4 cut(s)	181, 193, 528, 770
AfaI	GTAC	4 cut(s)	170, 229, 246, 559
AfiI	CCNNNNNNNGG	2 cut(s)	493, 567
AjiI	CACGTC	1 cut(s)	309
AluBI	AGCT	6 cut(s)	58, 164, 201, 362, 379, 524
AluI	AGCT	6 cut(s)	58, 164, 201, 362, 379, 524
Alw26I	GTCTC	2 cut(s)	193, 248
AlwI	GGATC	2 cut(s)	362, 375
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	4 cut(s)	36, 392, 484, 781
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	4 cut(s)	287, 461, 602, 722
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	3 cut(s)	36, 392, 484
BaeI	ACNNNNGTAYC	2 cut(s)	541, 574
BamHI	GGATCC	1 cut(s)	367
BbsI	GAAGAC	3 cut(s)	516, 693, 771
BbvCI	CCTCAGC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	6 cut(s)	440, 464, 508, 578, 635, 647
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	193, 248
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	568
Bme18I	GGWCC	3 cut(s)	36, 392, 484
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	4 cut(s)	36, 392, 484, 781
BmiI	GGNNCC	6 cut(s)	369, 394, 409, 485, 486, 498
BmrFI	CCNGG	1 cut(s)	568
BpiI	GAAGAC	3 cut(s)	516, 693, 771
BpmI	CTGGAG	2 cut(s)	359, 594
Bpu10I	CCTNAGC	2 cut(s)	343, 363
BpuMI	CCSGG	1 cut(s)	568
BsaI	GGTCTC	2 cut(s)	193, 248
BsaJI	CCNNGG	2 cut(s)	403, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 567
BseDI	CCNNGG	2 cut(s)	403, 567
BseGI	GGATG	4 cut(s)	325, 676, 709, 727
BseLI	CCNNNNNNNGG	2 cut(s)	493, 567
BseMII	CTCAG	4 cut(s)	111, 179, 357, 377
BseRI	GAGGAG	2 cut(s)	509, 620
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	1 cut(s)	782
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	493, 567
BsmAI	GTCTC	2 cut(s)	193, 248
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	782
Bso31I	GGTCTC	2 cut(s)	193, 248
BsoBI	CYCGRG	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	129, 367
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	4 cut(s)	110, 178, 356, 376
BspLI	GGNNCC	6 cut(s)	369, 394, 409, 485, 486, 498
BspPI	GGATC	2 cut(s)	362, 375
BspTNI	GGTCTC	2 cut(s)	193, 248
BssECI	CCNNGG	2 cut(s)	403, 567
BssMI	GATC	2 cut(s)	129, 367
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	557, 626
Bst6I	CTCTTC	4 cut(s)	94, 486, 597, 771
BstDEI	CTNAG	5 cut(s)	97, 135, 165, 343, 363
BstF5I	GGATG	4 cut(s)	325, 676, 709, 727
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	132, 370
BstMAI	GTCTC	2 cut(s)	193, 248
BstMBI	GATC	2 cut(s)	129, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 64
BstSCI	CCNGG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	3 cut(s)	516, 693, 771
BstX2I	RGATCY	2 cut(s)	129, 367
BstYI	RGATCY	2 cut(s)	129, 367
BsuRI	GGCC	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	325, 676, 709, 727
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	4 cut(s)	36, 392, 484, 781
CseI	GACGC	2 cut(s)	110, 228
Csp6I	GTAC	4 cut(s)	169, 228, 245, 558
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 454, 489
CviAII	CATG	2 cut(s)	21, 272
CviQI	GTAC	4 cut(s)	169, 228, 245, 558
DdeI	CTNAG	5 cut(s)	97, 135, 165, 343, 363
DpnI	GATC	2 cut(s)	131, 369
DpnII	GATC	2 cut(s)	129, 367
Eam1104I	CTCTTC	4 cut(s)	94, 486, 597, 771
EarI	CTCTTC	4 cut(s)	94, 486, 597, 771
Eco130I	CCWWGG	1 cut(s)	403
Eco31I	GGTCTC	2 cut(s)	193, 248
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	3 cut(s)	36, 392, 484
Eco57I	CTGAAG	4 cut(s)	181, 193, 528, 770
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	484, 781
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	2 cut(s)	24, 275
FaiI	YATR	2 cut(s)	22, 273
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	20, 271
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	4 cut(s)	332, 683, 716, 734
Fsp4HI	GCNGC	1 cut(s)	25
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	25
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	2 cut(s)	359, 594
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	567
HgaI	GACGC	2 cut(s)	110, 228
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	24, 275
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	4 cut(s)	287, 461, 602, 722
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	4 cut(s)	100, 129, 436, 508
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	4 cut(s)	205, 512, 701, 794
HpyCH4III	ACNGT	2 cut(s)	557, 626
HpyCH4IV	ACGT	2 cut(s)	230, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 64
HpyF3I	CTNAG	5 cut(s)	97, 135, 165, 343, 363
HpySE526I	ACGT	2 cut(s)	230, 308
Hsp92II	CATG	2 cut(s)	24, 275
HspAI	GCGC	1 cut(s)	312
KflI	GGGWCCC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	129, 367
LmnI	GCTCC	3 cut(s)	407, 496, 521
Lsp1109I	GCAGC	1 cut(s)	11
MaeII	ACGT	2 cut(s)	230, 308
MalI	GATC	2 cut(s)	131, 369
MboI	GATC	2 cut(s)	129, 367
MflI	RGATCY	2 cut(s)	129, 367
MluCI	AATT	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	203
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	24, 64
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	129, 367
NlaIII	CATG	2 cut(s)	24, 275
NlaIV	GGNNCC	6 cut(s)	369, 394, 409, 485, 486, 498
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	524
PspN4I	GGNNCC	6 cut(s)	369, 394, 409, 485, 486, 498
PspPI	GGNCC	4 cut(s)	36, 392, 484, 781
PspPPI	RGGWCCY	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	129, 367
RsaI	GTAC	4 cut(s)	170, 229, 246, 559
RsaNI	GTAC	4 cut(s)	169, 228, 245, 558
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	129, 367
Sau96I	GGNCC	4 cut(s)	36, 392, 484, 781
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	568
SinI	GGWCC	3 cut(s)	36, 392, 484
Sse9I	AATT	1 cut(s)	732
SsiI	CCGC	1 cut(s)	802
SspI	AATATT	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	557, 626
TaiI	ACGT	2 cut(s)	233, 311
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	732
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	9 cut(s)	38, 435, 468, 615, 693, 699, 720, 762, 774
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	36, 392, 484
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.