Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

36768779 .. 36771769

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAGAGATGGATCTAACACCAAAGTCAGCGGTAGCGGCGTTCGAGGGAGATGGTGGAGGATATTACATATGGTCATTTCCGGCGCTTGGGGAGGCCAACGTTGGCGCCGGCAAGCTTGTATTGAAGCCTAGTGGTTTTGCTCTTCCTCACTATGCAGATTCTGCCAAACTGGGATATGTTCTTCAAGGTGAGGATGGACTAGTTGGAATGGTATTCCCCAACACATCAGAGGAGGTAGTATTGAAGCTCAAGAAAGGAGACGTGATTCCGGTACCACTCGGAGCAGTCTCATGGTGGTTCAACAATGGCGGCTCATCCAATGACCTTGTTATCGTTTTCTTGGGAGAAACTACAAAGGCTTACACTCCTGGTCTGTTTACTTACTTCTTCATAGCAGGAACTCAAAGTCTTCTAGGAGGTTTCTCAACTGACTTCATTAGCAAGTCATTCAATATTACCAAAGATGAAGCAGATGAGGTCACCAAAAACCAGACAGGGGTTTTGCTAGTTAAGCTAGAACAGGGAAAGACCATGCCTAAGCCCAACGCACTCATCACCCAAAAACTTGTTCATCAACTCACTGTTAGTGCCACTTTGACTGAGAAGGAGTTTCCTTTTCTTAACCAGGCTGGGTTAAGTGCCAACCTCATAAAACTTGAAGCCTACGCAATTTCCTCTCCCATTTACACTACTGATTCTTCGGTTCAAGTGATCTATGTCGTTGGAGGAGGTGGTCGGGTCCAAATTGCGGGTCTTAATGGTCAGAGTGCGTTGGATGCGGAAGTAACTGCGGGTCACTTGATCGTTGTGCCTAGGTTTTTCATGGTAGCGAAACTTGCCGGGGAAAAAGGAATGGAGTGTTTCTCTGTCATTACAAGTTCCCGGGCTGTCCTGGAAGACTTAACTGGCAAGACATCAGTATTGAGGGCATTATCACCTGAGGTGCTACAAATATCCCTAAATATAAATCCAGAGTTGCAGACAATTCTCCAATCAAAGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

35.76

Weight (kDa)

5.23

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	26 - 157	2.8e-15	Cupin
Cupin_1	PF00190	196 - 326	9.9e-19	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	107, 274
AciI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
AgsI	TTSAA	7 cut(s)	127, 188, 247, 304, 454, 662, 710
AhlI	ACTAGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	370, 627, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	3 cut(s)	118, 250, 517
AluI	AGCT	3 cut(s)	118, 250, 517
Alw26I	GTCTC	2 cut(s)	255, 295
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	885
AoxI	GGCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	4 cut(s)	487, 519, 739, 771
Asp718I	GGTACC	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	88, 110
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	3 cut(s)	844, 886, 887
AsuHPI	GGTGA	4 cut(s)	203, 475, 550, 930
AvaI	CYCGRG	1 cut(s)	885
AvaII	GGWCC	1 cut(s)	742
AvrII	CCTAGG	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	942
BanI	GGYRCC	2 cut(s)	107, 274
BbsI	GAAGAC	2 cut(s)	404, 906
BccI	CCATC	3 cut(s)	4, 47, 191
BciT130I	CCWGG	3 cut(s)	372, 629, 896
BcnI	CCSGG	3 cut(s)	844, 886, 887
BcoDI	GTCTC	2 cut(s)	255, 295
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	7 cut(s)	132, 203, 416, 509, 518, 816, 1009
BfoI	RGCGCY	2 cut(s)	89, 111
BisI	GCNGC	2 cut(s)	39, 313
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	2 cut(s)	40, 314
Bme1390I	CCNGG	6 cut(s)	372, 629, 844, 886, 887, 896
Bme18I	GGWCC	1 cut(s)	742
BmeT110I	CYCGRG	1 cut(s)	885
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	3 cut(s)	109, 276, 743
BmrFI	CCNGG	6 cut(s)	372, 629, 844, 886, 887, 896
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	404, 906
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	844, 886, 887
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	815, 843, 885
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 499, 751
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	177, 913
Bse21I	CCTNAGG	1 cut(s)	942
BseBI	CCWGG	3 cut(s)	372, 629, 896
BseDI	CCNNGG	3 cut(s)	815, 843, 885
BseGI	GGATG	3 cut(s)	202, 317, 784
BseLI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
BseMII	CTCAG	2 cut(s)	594, 933
BseNI	ACTGG	2 cut(s)	177, 913
BseRI	GAGGAG	2 cut(s)	248, 744
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	107, 274
BsiHKCI	CYCGRG	1 cut(s)	885
BsiSI	CCGG	5 cut(s)	83, 111, 272, 843, 886
BslI	CCNNNNNNNGG	3 cut(s)	89, 499, 751
BsmAI	GTCTC	2 cut(s)	255, 295
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	885
Bsp143I	GATC	3 cut(s)	13, 714, 804
BspACI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	595, 934
BspLI	GGNNCC	3 cut(s)	109, 276, 743
BspPI	GGATC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	107, 274
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	177, 913
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	815, 843, 885
BssMI	GATC	3 cut(s)	13, 714, 804
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	3 cut(s)	372, 629, 896
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	112, 116
BstDEI	CTNAG	3 cut(s)	540, 603, 942
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	3 cut(s)	202, 317, 784
BstH2I	RGCGCY	2 cut(s)	89, 111
BstHHI	GCGC	2 cut(s)	88, 110
BstKTI	GATC	3 cut(s)	16, 717, 807
BstMAI	GTCTC	2 cut(s)	255, 295
BstMBI	GATC	3 cut(s)	13, 714, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
BstNI	CCWGG	3 cut(s)	372, 629, 896
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	6 cut(s)	370, 627, 842, 884, 885, 894
BstV2I	GAAGAC	2 cut(s)	404, 906
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	202, 317, 784
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	112, 116
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	88, 110
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	742
Cfr9I	CCCGGG	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	294, 535, 826
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	3 cut(s)	540, 603, 942
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	15, 716, 806
DpnII	GATC	3 cut(s)	13, 714, 804
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	815
Eco47I	GGWCC	1 cut(s)	742
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	885
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	370, 627, 894
EcoT14I	CCWWGG	1 cut(s)	815
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	815
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	3 cut(s)	297, 538, 829
FatI	CATG	3 cut(s)	293, 534, 825
FauI	CCCGC	2 cut(s)	745, 787
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	39, 313
FokI	GGATG	3 cut(s)	209, 304, 791
Fsp4HI	GCNGC	2 cut(s)	39, 313
FspBI	CTAG	7 cut(s)	132, 203, 416, 509, 518, 816, 1009
GlaI	GCGC	2 cut(s)	87, 109
GluI	GCNGC	2 cut(s)	39, 313
GsaI	CCCAGC	1 cut(s)	636
HaeII	RGCGCY	2 cut(s)	89, 111
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	5 cut(s)	83, 111, 272, 843, 886
HhaI	GCGC	2 cut(s)	88, 110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	297, 538, 829
Hin6I	GCGC	2 cut(s)	86, 108
HinP1I	GCGC	2 cut(s)	86, 108
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	161, 268, 698
HpaII	CCGG	5 cut(s)	83, 111, 272, 843, 886
HphI	GGTGA	4 cut(s)	203, 475, 550, 930
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	232, 284, 768
Hpy188III	TCNNGA	2 cut(s)	253, 974
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	102, 264
HpyCH4V	TGCA	2 cut(s)	158, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
HpyF3I	CTNAG	3 cut(s)	540, 603, 942
HpySE526I	ACGT	2 cut(s)	102, 264
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	297, 538, 829
HspAI	GCGC	2 cut(s)	86, 108
KasI	GGCGCC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	13, 714, 804
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	284
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	7 cut(s)	132, 203, 416, 509, 518, 816, 1009
MaeII	ACGT	2 cut(s)	102, 264
MaeIII	GTNAC	3 cut(s)	481, 787, 797
MalI	GATC	3 cut(s)	15, 716, 806
MboI	GATC	3 cut(s)	13, 714, 804
MboII	GAAGA	6 cut(s)	137, 176, 382, 404, 693, 911
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	3 cut(s)	672, 747, 987
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	3 cut(s)	187, 706, 756
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	6 cut(s)	513, 624, 638, 759, 905, 1005
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	5 cut(s)	83, 111, 272, 843, 886
MspR9I	CCNGG	6 cut(s)	372, 629, 844, 886, 887, 896
MvaI	CCWGG	3 cut(s)	372, 629, 896
MwoI	GCNNNNNNNGC	5 cut(s)	38, 164, 514, 779, 839
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	3 cut(s)	844, 886, 887
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	3 cut(s)	13, 714, 804
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	3 cut(s)	297, 538, 829
NlaIV	GGNNCC	3 cut(s)	109, 276, 743
NmuCI	GTSAC	2 cut(s)	481, 797
PciSI	GCTCTTC	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	161, 268, 698
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	2 cut(s)	40, 314
PluTI	GGCGCC	1 cut(s)	111
Psp1406I	AACGTT	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	370, 627, 894
PspEI	GGTNACC	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	3 cut(s)	370, 627, 894
PspN4I	GGNNCC	3 cut(s)	109, 276, 743
PspPI	GGNCC	1 cut(s)	742
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	513, 624, 638, 759, 905, 1005
SatI	GCNGC	2 cut(s)	39, 313
Sau3AI	GATC	3 cut(s)	13, 714, 804
Sau96I	GGNCC	1 cut(s)	742
ScrFI	CCNGG	6 cut(s)	372, 629, 844, 886, 887, 896
SfaNI	GCATC	1 cut(s)	769
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	742
SmaI	CCCGGG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	3 cut(s)	672, 747, 987
SsiI	CCGC	6 cut(s)	32, 38, 312, 752, 782, 794
SspDI	GGCGCC	1 cut(s)	107
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	7 cut(s)	132, 203, 416, 509, 518, 816, 1009
StyD4I	CCNGG	6 cut(s)	370, 627, 842, 884, 885, 894
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	105, 267
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	672, 747, 987
TauI	GCSGC	2 cut(s)	41, 315
TfiI	GAWTC	3 cut(s)	161, 268, 698
Tru1I	TTAA	6 cut(s)	513, 624, 638, 759, 905, 1005
Tru9I	TTAA	6 cut(s)	513, 624, 638, 759, 905, 1005
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	481, 797
Tsp45I	GTSAC	2 cut(s)	481, 797
TspDTI	ATGAA	5 cut(s)	382, 427, 483, 563, 814
TspMI	CCCGGG	1 cut(s)	885
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	742
XmaI	CCCGGG	1 cut(s)	885
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	7 cut(s)	132, 203, 416, 509, 518, 816, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.