Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

63904570 .. 63906206

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTTCCCCCATTGGCTAGGCAGGGTTCTAATTACAATCTAACTTTGGATTGTAATGAGGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACAAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGGACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTCTCAATCTCAATTCCGCAGCAGCCAATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCCAACGATGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGGACTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAACAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCAGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTCATACCAAACAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTAAACACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

333

Amino Acids

37.2

Weight (kDa)

7.87

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	260 - 305	7.7e-09	Basic region leucine zipper
bZIP_1	PF00170	262 - 305	3.6e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	318, 491
AcsI	RAATTY	2 cut(s)	262, 589
AcuI	CTGAAG	1 cut(s)	696
AgsI	TTSAA	6 cut(s)	110, 142, 268, 274, 595, 942
AjnI	CCWGG	1 cut(s)	899
AluBI	AGCT	4 cut(s)	208, 506, 632, 992
AluI	AGCT	4 cut(s)	208, 506, 632, 992
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	2 cut(s)	318, 491
ApoI	RAATTY	2 cut(s)	262, 589
AseI	ATTAAT	1 cut(s)	284
Asp700I	GAANNNNTTC	2 cut(s)	330, 876
AspLEI	GCGC	2 cut(s)	747, 981
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BccI	CCATC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	901
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	3 cut(s)	193, 340, 801
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	63, 452
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	476
BlpI	GCTNAGC	1 cut(s)	561
Bme1390I	CCNGG	1 cut(s)	901
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	901
BmsI	GCATC	4 cut(s)	397, 477, 713, 990
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	904
BsaBI	GATNNNNATC	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	901
BseGI	GGATG	5 cut(s)	10, 169, 346, 478, 804
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	4 cut(s)	575, 645, 734, 768
BseRI	GAGGAG	1 cut(s)	799
BsmAI	GTCTC	1 cut(s)	723
Bsp143I	GATC	5 cut(s)	193, 310, 340, 496, 801
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	1 cut(s)	366
BspCNI	CTCAG	4 cut(s)	574, 646, 733, 767
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	318, 491
BssMI	GATC	5 cut(s)	193, 310, 340, 496, 801
Bst2UI	CCWGG	1 cut(s)	901
Bst4CI	ACNGT	2 cut(s)	48, 861
Bst6I	CTCTTC	2 cut(s)	628, 788
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	4 cut(s)	134, 522, 690, 846
BstDEI	CTNAG	5 cut(s)	561, 654, 720, 754, 974
BstF5I	GGATG	5 cut(s)	10, 169, 346, 478, 804
BstHHI	GCGC	2 cut(s)	747, 981
BstKTI	GATC	5 cut(s)	196, 313, 343, 499, 804
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	5 cut(s)	193, 310, 340, 496, 801
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 557, 731, 910
BstNI	CCWGG	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	899
BstXI	CCANNNNNNTGG	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	476
BtsCI	GGATG	5 cut(s)	10, 169, 346, 478, 804
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	4 cut(s)	134, 522, 690, 846
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	747, 981
Cfr13I	GGNCC	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	3 cut(s)	338, 731, 958
CviJI	RGCY	9 cut(s)	62, 136, 208, 374, 506, 632, 848, 904, 992
CviKI_1	RGCY	9 cut(s)	62, 136, 208, 374, 506, 632, 848, 904, 992
DdeI	CTNAG	5 cut(s)	561, 654, 720, 754, 974
DpnI	GATC	5 cut(s)	195, 312, 342, 498, 803
DpnII	GATC	5 cut(s)	193, 310, 340, 496, 801
Eam1104I	CTCTTC	2 cut(s)	628, 788
EarI	CTCTTC	2 cut(s)	628, 788
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	899
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	3 cut(s)	341, 734, 961
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	3 cut(s)	337, 730, 957
FbaI	TGATCA	3 cut(s)	193, 340, 801
FokI	GGATG	5 cut(s)	17, 176, 333, 465, 811
FspBI	CTAG	2 cut(s)	63, 452
GlaI	GCGC	2 cut(s)	746, 980
HhaI	GCGC	2 cut(s)	747, 981
Hin1II	CATG	3 cut(s)	341, 734, 961
Hin6I	GCGC	2 cut(s)	745, 979
HinP1I	GCGC	2 cut(s)	745, 979
HinfI	GANTC	8 cut(s)	380, 416, 584, 605, 637, 658, 716, 815
Hpy188I	TCNGA	3 cut(s)	655, 715, 757
Hpy188III	TCNNGA	4 cut(s)	24, 197, 338, 641
HpyAV	CCTTC	5 cut(s)	194, 225, 237, 316, 760
HpyCH4III	ACNGT	2 cut(s)	48, 861
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 557, 731, 910
HpyF3I	CTNAG	5 cut(s)	561, 654, 720, 754, 974
Hsp92II	CATG	3 cut(s)	341, 734, 961
HspAI	GCGC	2 cut(s)	745, 979
Ksp22I	TGATCA	3 cut(s)	193, 340, 801
Kzo9I	GATC	5 cut(s)	193, 310, 340, 496, 801
LweI	GCATC	4 cut(s)	397, 477, 713, 990
MaeI	CTAG	2 cut(s)	63, 452
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	5 cut(s)	195, 312, 342, 498, 803
MboI	GATC	5 cut(s)	193, 310, 340, 496, 801
MboII	GAAGA	8 cut(s)	210, 213, 222, 310, 615, 702, 805, 930
MlyI	GAGTC	4 cut(s)	578, 614, 725, 824
MmeI	TCCRAC	4 cut(s)	506, 524, 561, 843
MnlI	CCTC	9 cut(s)	31, 97, 244, 360, 732, 777, 780, 789, 913
MroXI	GAANNNNTTC	2 cut(s)	330, 876
MseI	TTAA	2 cut(s)	174, 284
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	901
MvaI	CCWGG	1 cut(s)	901
MwoI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 557, 731, 910
NdeII	GATC	5 cut(s)	193, 310, 340, 496, 801
NlaIII	CATG	3 cut(s)	341, 734, 961
NlaIV	GGNNCC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	337
PdmI	GAANNNNTTC	2 cut(s)	330, 876
PfeI	GAWTC	4 cut(s)	380, 416, 637, 658
PleI	GAGTC	4 cut(s)	578, 613, 724, 823
PpsI	GAGTC	4 cut(s)	578, 613, 724, 823
PshBI	ATTAAT	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	899
PspGI	CCWGG	1 cut(s)	899
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	174, 284
Sau3AI	GATC	5 cut(s)	193, 310, 340, 496, 801
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	4 cut(s)	578, 614, 725, 824
ScrFI	CCNGG	1 cut(s)	901
SfaNI	GCATC	4 cut(s)	397, 477, 713, 990
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	2 cut(s)	63, 452
StyD4I	CCNGG	1 cut(s)	899
TaaI	ACNGT	2 cut(s)	48, 861
TaqI	TCGA	2 cut(s)	457, 587
TfiI	GAWTC	4 cut(s)	380, 416, 637, 658
Tru1I	TTAA	2 cut(s)	174, 284
Tru9I	TTAA	2 cut(s)	174, 284
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	6 cut(s)	323, 393, 615, 650, 774, 779
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	2 cut(s)	262, 589
XmnI	GAANNNNTTC	2 cut(s)	330, 876
XspI	CTAG	2 cut(s)	63, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.