Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

41925717 .. 41927036

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G508200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGGACAGGACTTTGGAGTCTGGAAATGGAGGTGAGAGGCCACAGTTTCCTCCTTTGGCTAGGCAGGAGTCTTACAATCTCTCTAATTTGGATGAGGCCCAGAGCCACCTGGGAAATATTAACAGCAAGAATGGCATGCATTTTGATGAGTTGCTTAAAAATGTGATATCAGTTGAAGAGGGCCAGCAGCTACAAAACCCTTCCTCCTCCTCATTGCCGGCTTCATTTTTTCTTGGGAATTTCAACTTGAATGGAGCATTGAGTAGGAAGACTGCGGATGAGGTGTGGAAGGAAATAGCTCATCATGAACATGTTAACACCGTGGTGGCCAACGAATCATTGCAGCAACGGTTGAGTACTATCGGGGAGACTCCAGCTACTCCCGAACATTTTTTAGTTCGTGCCGGTGTCATTAACATAGGGAACCAACCTAGTCTCATGAATGCTGCTCAGCCAATCATGGGAATTGATCCAACAGTTGTATCACAGCAGACAGATTGGCTTCAATTTCAAATGGCTGCTGTTCAGCAGCAGATGACAATGCTGGATTCAAATTTGAAGGTTCGTGAGTCAGTATATGAGAACTCAGCTGTGAATTTTGATTACTCAGAGAACCAAGTTGGCATGTCAATGCCAATGCCAGCAATTTCAGCTTCCTCTTGCGAGTCTCGGGCAACCGCTGTGAGGAAGCGCCATTTTTCGGATGAAATGAAGGAGAGAACTATAGAGAGGAGACAGAAGAGGATGATCAAGAACCGCGAATCAGCTGCCAGGTCAAGGGCAAGGAAGCAGGCTTATACCAATGAGTTGGAGCATGAAGTATTCCAGTTGGGAAAAGTGAATAGCTGGCTCAAAAAGCAAAAGGAGGTGGAGATGATCTTAGCTTCAAACCCTACTTCCATGCCTAAATACCAACTCCGGCGCACGAGTTCAGCTCCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

316

Amino Acids

35.53

Weight (kDa)

6.73

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccII	CGCG	1 cut(s)	762
AciI	CCGC	3 cut(s)	278, 681, 760
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	241, 556, 598
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	4 cut(s)	464, 687, 703, 780
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	8 cut(s)	179, 247, 253, 509, 515, 555, 562, 891
AjnI	CCWGG	2 cut(s)	111, 773
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	9 cut(s)	193, 302, 380, 593, 656, 770, 849, 887, 938
AluI	AGCT	9 cut(s)	193, 302, 380, 593, 656, 770, 849, 887, 938
Alw26I	GTCTC	4 cut(s)	365, 443, 675, 730
AlwI	GGATC	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	4 cut(s)	41, 99, 184, 330
ApeKI	GCWGC	6 cut(s)	190, 346, 449, 521, 532, 770
ApoI	RAATTY	3 cut(s)	241, 556, 598
AspLEI	GCGC	2 cut(s)	696, 927
AspS9I	GGNCC	2 cut(s)	100, 184
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	672
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BalI	TGGCCA	1 cut(s)	332
BauI	CACGAG	1 cut(s)	928
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	6 cut(s)	202, 358, 436, 508, 544, 757
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	2 cut(s)	113, 775
BclI	TGATCA	1 cut(s)	750
BcoDI	GTCTC	4 cut(s)	365, 443, 675, 730
BfaI	CTAG	3 cut(s)	63, 435, 946
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	697
BisI	GCNGC	6 cut(s)	191, 347, 450, 522, 533, 771
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	6 cut(s)	192, 348, 451, 523, 534, 772
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	113, 775
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	2 cut(s)	100, 184
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	113, 775
BpiI	GAAGAC	1 cut(s)	278
BplI	GAGNNNNNCTC	1 cut(s)	922
BpmI	CTGGAG	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	112, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 687, 703, 780
Bse118I	RCCGGY	2 cut(s)	220, 407
Bse1I	ACTGG	1 cut(s)	829
Bse3DI	GCAATG	2 cut(s)	215, 341
BseBI	CCWGG	2 cut(s)	113, 775
BseDI	CCNNGG	2 cut(s)	112, 324
BseGI	GGATG	4 cut(s)	100, 286, 712, 753
BseLI	CCNNNNNNNGG	4 cut(s)	464, 687, 703, 780
BseMI	GCAATG	2 cut(s)	215, 341
BseMII	CTCAG	3 cut(s)	467, 603, 624
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	3 cut(s)	199, 202, 748
BseXI	GCAGC	6 cut(s)	202, 358, 436, 508, 544, 757
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	4 cut(s)	43, 101, 186, 332
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	3 cut(s)	221, 408, 922
BslI	CCNNNNNNNGG	4 cut(s)	464, 687, 703, 780
BsmAI	GTCTC	4 cut(s)	365, 443, 675, 730
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	43, 101, 186, 332
BsoBI	CYCGRG	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	472, 750, 879
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	3 cut(s)	278, 681, 760
BspANI	GGCC	4 cut(s)	43, 101, 186, 332
BspCNI	CTCAG	3 cut(s)	466, 602, 623
BspFNI	CGCG	1 cut(s)	762
BspHI	TCATGA	2 cut(s)	307, 441
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	215, 341
BsrFI	RCCGGY	2 cut(s)	220, 407
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	2 cut(s)	220, 407
BssECI	CCNNGG	2 cut(s)	112, 324
BssMI	GATC	3 cut(s)	472, 750, 879
BssSI	CACGAG	1 cut(s)	928
Bst2BI	CACGAG	1 cut(s)	928
Bst2UI	CCWGG	2 cut(s)	113, 775
Bst4CI	ACNGT	4 cut(s)	48, 325, 354, 481
Bst6I	CTCTTC	2 cut(s)	174, 737
BstC8I	GCNNGC	6 cut(s)	140, 188, 222, 645, 795, 851
BstDEI	CTNAG	4 cut(s)	453, 589, 610, 883
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	100, 286, 712, 753
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	2 cut(s)	696, 927
BstKTI	GATC	3 cut(s)	475, 753, 882
BstMAI	GTCTC	4 cut(s)	365, 443, 675, 730
BstMBI	GATC	3 cut(s)	472, 750, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 653, 859
BstNI	CCWGG	2 cut(s)	113, 775
BstNSI	RCATGY	3 cut(s)	142, 317, 631
BstSCI	CCNGG	2 cut(s)	111, 773
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	6 cut(s)	202, 358, 436, 508, 544, 757
BstV2I	GAAGAC	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	811
BsuRI	GGCC	4 cut(s)	43, 101, 186, 332
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	100, 286, 712, 753
Cac8I	GCNNGC	6 cut(s)	140, 188, 222, 645, 795, 851
CciI	TCATGA	2 cut(s)	307, 441
CfoI	GCGC	2 cut(s)	696, 927
Cfr10I	RCCGGY	2 cut(s)	220, 407
Cfr13I	GGNCC	2 cut(s)	100, 184
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	8 cut(s)	139, 308, 314, 442, 463, 628, 818, 904
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	4 cut(s)	453, 589, 610, 883
DpnI	GATC	3 cut(s)	474, 752, 881
DpnII	GATC	3 cut(s)	472, 750, 879
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	174, 737
EarI	CTCTTC	2 cut(s)	174, 737
Eco32I	GATATC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	111, 773
EcoRV	GATATC	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	144
FaeI	CATG	8 cut(s)	142, 311, 317, 445, 466, 631, 821, 907
FatI	CATG	8 cut(s)	138, 307, 313, 441, 462, 627, 817, 903
FbaI	TGATCA	1 cut(s)	750
Fnu4HI	GCNGC	6 cut(s)	191, 347, 450, 522, 533, 771
FokI	GGATG	4 cut(s)	107, 293, 719, 760
Fsp4HI	GCNGC	6 cut(s)	191, 347, 450, 522, 533, 771
FspBI	CTAG	3 cut(s)	63, 435, 946
GlaI	GCGC	2 cut(s)	695, 926
GluI	GCNGC	6 cut(s)	191, 347, 450, 522, 533, 771
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	697
HaeIII	GGCC	4 cut(s)	43, 101, 186, 332
HapII	CCGG	3 cut(s)	221, 408, 922
HhaI	GCGC	2 cut(s)	696, 927
Hin1II	CATG	8 cut(s)	142, 311, 317, 445, 466, 631, 821, 907
Hin6I	GCGC	2 cut(s)	694, 925
HinP1I	GCGC	2 cut(s)	694, 925
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	8 cut(s)	20, 71, 338, 373, 551, 572, 668, 764
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	3 cut(s)	221, 408, 922
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	613, 706
Hpy188III	TCNNGA	6 cut(s)	24, 308, 386, 442, 569, 754
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	4 cut(s)	213, 286, 556, 709
HpyCH4III	ACNGT	4 cut(s)	48, 325, 354, 481
HpyCH4V	TGCA	2 cut(s)	142, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 653, 859
HpyF3I	CTNAG	4 cut(s)	453, 589, 610, 883
Hsp92II	CATG	8 cut(s)	142, 311, 317, 445, 466, 631, 821, 907
HspAI	GCGC	2 cut(s)	694, 925
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	750
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	472, 750, 879
LmnI	GCTCC	3 cut(s)	257, 814, 943
Lsp1109I	GCAGC	6 cut(s)	202, 358, 436, 508, 544, 757
MaeI	CTAG	3 cut(s)	63, 435, 946
MalI	GATC	3 cut(s)	474, 752, 881
MboI	GATC	3 cut(s)	472, 750, 879
MboII	GAAGA	3 cut(s)	191, 283, 754
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	7 cut(s)	88, 241, 468, 509, 556, 598, 648
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	5 cut(s)	29, 80, 367, 581, 677
MmeI	TCCRAC	2 cut(s)	500, 792
Mox20I	TGGCCA	1 cut(s)	332
Mph1103I	ATGCAT	1 cut(s)	144
MroNI	GCCGGC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	4 cut(s)	123, 159, 318, 417
MslI	CAYNNNNRTG	4 cut(s)	147, 312, 326, 632
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	3 cut(s)	593, 683, 770
MspI	CCGG	3 cut(s)	221, 408, 922
MspR9I	CCNGG	2 cut(s)	113, 775
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	113, 775
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	135, 653, 859
NaeI	GCCGGC	1 cut(s)	222
NdeII	GATC	3 cut(s)	472, 750, 879
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	8 cut(s)	142, 311, 317, 445, 466, 631, 821, 907
NlaIV	GGNNCC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	3 cut(s)	142, 317, 631
OliI	CACNNNNGTG	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	142
PagI	TCATGA	2 cut(s)	307, 441
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	338, 551, 764
PkrI	GCNGC	6 cut(s)	192, 348, 451, 523, 534, 772
PleI	GAGTC	5 cut(s)	28, 79, 367, 580, 676
PpsI	GAGTC	5 cut(s)	28, 79, 367, 580, 676
PscI	ACATGT	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	111, 773
PspGI	CCWGG	2 cut(s)	111, 773
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	100, 184
PvuII	CAGCTG	2 cut(s)	593, 770
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	4 cut(s)	147, 312, 326, 632
SaqAI	TTAA	4 cut(s)	123, 159, 318, 417
SatI	GCNGC	6 cut(s)	191, 347, 450, 522, 533, 771
Sau3AI	GATC	3 cut(s)	472, 750, 879
Sau96I	GGNCC	2 cut(s)	100, 184
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	5 cut(s)	29, 80, 367, 581, 677
ScrFI	CCNGG	2 cut(s)	113, 775
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	4 cut(s)	147, 312, 326, 632
SphI	GCATGC	1 cut(s)	142
Sse9I	AATT	7 cut(s)	88, 241, 468, 509, 556, 598, 648
SsiI	CCGC	3 cut(s)	278, 681, 760
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	3 cut(s)	63, 435, 946
StyD4I	CCNGG	2 cut(s)	111, 773
TaaI	ACNGT	4 cut(s)	48, 325, 354, 481
TasI	AATT	7 cut(s)	88, 241, 468, 509, 556, 598, 648
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	338, 551, 764
Tru1I	TTAA	4 cut(s)	123, 159, 318, 417
Tru9I	TTAA	4 cut(s)	123, 159, 318, 417
TseI	GCWGC	6 cut(s)	190, 346, 449, 521, 532, 770
TspDTI	ATGAA	6 cut(s)	216, 324, 458, 723, 728, 834
XapI	RAATTY	3 cut(s)	241, 556, 598
XceI	RCATGY	3 cut(s)	142, 317, 631
XspI	CTAG	3 cut(s)	63, 435, 946
ZrmI	AGTACT	1 cut(s)	361
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.