Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

68981317 .. 68983692

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG489600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTTCCCCCATTGACTAGGCAGGGTTCTAATTACAATCTAACTTTGGATTGTAATGAGGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACAAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGGACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTTTCAATCTCAATTCCGCTGCAGCCGATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCCAACGATGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGGACTCGAATTTCAAGGTTTGTGAGTCGGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCGGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTCATACCAAACAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACAAATTCCATGCCTAAACACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

332

Amino Acids

37.17

Weight (kDa)

7.27

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	259 - 304	7.6e-09	Basic region leucine zipper
bZIP_1	PF00170	261 - 304	4.3e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	318, 491
AcsI	RAATTY	3 cut(s)	262, 586, 949
AcuI	CTGAAG	1 cut(s)	693
AgsI	TTSAA	7 cut(s)	110, 142, 268, 274, 355, 592, 939
AjnI	CCWGG	1 cut(s)	896
AluBI	AGCT	4 cut(s)	208, 506, 629, 989
AluI	AGCT	4 cut(s)	208, 506, 629, 989
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	2 cut(s)	318, 491
ApoI	RAATTY	3 cut(s)	262, 586, 949
AseI	ATTAAT	1 cut(s)	284
Asp700I	GAANNNNTTC	2 cut(s)	330, 873
AspLEI	GCGC	2 cut(s)	744, 978
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	731, 763
BccI	CCATC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	898
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	3 cut(s)	193, 340, 798
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	63, 452
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	476
BlpI	GCTNAGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	898
BmsI	GCATC	4 cut(s)	397, 477, 710, 987
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	901
BsaBI	GATNNNNATC	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	898
BseGI	GGATG	6 cut(s)	10, 169, 346, 478, 760, 801
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	3 cut(s)	572, 642, 731
BseRI	GAGGAG	1 cut(s)	796
BsmAI	GTCTC	1 cut(s)	720
Bsp143I	GATC	5 cut(s)	193, 310, 340, 496, 798
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	1 cut(s)	366
BspCNI	CTCAG	3 cut(s)	571, 643, 730
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	318, 491
BssMI	GATC	5 cut(s)	193, 310, 340, 496, 798
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	2 cut(s)	48, 858
Bst6I	CTCTTC	2 cut(s)	625, 785
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	4 cut(s)	134, 522, 687, 843
BstDEI	CTNAG	4 cut(s)	558, 651, 717, 971
BstF5I	GGATG	6 cut(s)	10, 169, 346, 478, 760, 801
BstHHI	GCGC	2 cut(s)	744, 978
BstKTI	GATC	5 cut(s)	196, 313, 343, 499, 801
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	5 cut(s)	193, 310, 340, 496, 798
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 695, 728, 907
BstNI	CCWGG	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	896
BstSFI	CTRYAG	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	476
BtsCI	GGATG	6 cut(s)	10, 169, 346, 478, 760, 801
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	4 cut(s)	134, 522, 687, 843
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	744, 978
Cfr13I	GGNCC	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	3 cut(s)	338, 728, 955
CviJI	RGCY	8 cut(s)	136, 208, 374, 506, 629, 845, 901, 989
CviKI_1	RGCY	8 cut(s)	136, 208, 374, 506, 629, 845, 901, 989
DdeI	CTNAG	4 cut(s)	558, 651, 717, 971
DpnI	GATC	5 cut(s)	195, 312, 342, 498, 800
DpnII	GATC	5 cut(s)	193, 310, 340, 496, 798
Eam1104I	CTCTTC	2 cut(s)	625, 785
EarI	CTCTTC	2 cut(s)	625, 785
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	896
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	3 cut(s)	341, 731, 958
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	3 cut(s)	337, 727, 954
FbaI	TGATCA	3 cut(s)	193, 340, 798
FokI	GGATG	6 cut(s)	17, 176, 333, 465, 767, 808
FspBI	CTAG	2 cut(s)	63, 452
GlaI	GCGC	2 cut(s)	743, 977
HhaI	GCGC	2 cut(s)	744, 978
Hin1II	CATG	3 cut(s)	341, 731, 958
Hin6I	GCGC	2 cut(s)	742, 976
HinP1I	GCGC	2 cut(s)	742, 976
HinfI	GANTC	8 cut(s)	380, 416, 581, 602, 634, 655, 713, 812
Hpy188I	TCNGA	3 cut(s)	652, 712, 754
Hpy188III	TCNNGA	4 cut(s)	24, 197, 338, 638
HpyAV	CCTTC	5 cut(s)	194, 225, 237, 316, 757
HpyCH4III	ACNGT	2 cut(s)	48, 858
HpyCH4V	TGCA	2 cut(s)	371, 388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 695, 728, 907
HpyF3I	CTNAG	4 cut(s)	558, 651, 717, 971
Hsp92II	CATG	3 cut(s)	341, 731, 958
HspAI	GCGC	2 cut(s)	742, 976
Ksp22I	TGATCA	3 cut(s)	193, 340, 798
Kzo9I	GATC	5 cut(s)	193, 310, 340, 496, 798
LweI	GCATC	4 cut(s)	397, 477, 710, 987
MaeI	CTAG	2 cut(s)	63, 452
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	5 cut(s)	195, 312, 342, 498, 800
MboI	GATC	5 cut(s)	193, 310, 340, 496, 798
MboII	GAAGA	8 cut(s)	210, 213, 222, 310, 612, 699, 802, 927
MlyI	GAGTC	4 cut(s)	575, 611, 722, 821
MmeI	TCCRAC	4 cut(s)	506, 524, 558, 840
MnlI	CCTC	8 cut(s)	31, 97, 244, 729, 774, 777, 786, 910
MroXI	GAANNNNTTC	2 cut(s)	330, 873
MseI	TTAA	2 cut(s)	174, 284
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	368, 506
MspR9I	CCNGG	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	898
MwoI	GCNNNNNNNGC	6 cut(s)	120, 129, 554, 695, 728, 907
NdeII	GATC	5 cut(s)	193, 310, 340, 496, 798
NlaIII	CATG	3 cut(s)	341, 731, 958
NlaIV	GGNNCC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	337
PdmI	GAANNNNTTC	2 cut(s)	330, 873
PfeI	GAWTC	4 cut(s)	380, 416, 634, 655
PleI	GAGTC	4 cut(s)	575, 610, 721, 820
PpsI	GAGTC	4 cut(s)	575, 610, 721, 820
PshBI	ATTAAT	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	896
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	174, 284
Sau3AI	GATC	5 cut(s)	193, 310, 340, 496, 798
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	4 cut(s)	575, 611, 722, 821
ScrFI	CCNGG	1 cut(s)	898
SfaNI	GCATC	4 cut(s)	397, 477, 710, 987
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	880
SmoI	CTYRAG	1 cut(s)	880
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	2 cut(s)	63, 452
StyD4I	CCNGG	1 cut(s)	896
TaaI	ACNGT	2 cut(s)	48, 858
TaqI	TCGA	2 cut(s)	457, 584
TfiI	GAWTC	4 cut(s)	380, 416, 634, 655
Tru1I	TTAA	2 cut(s)	174, 284
Tru9I	TTAA	2 cut(s)	174, 284
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	6 cut(s)	323, 393, 612, 647, 771, 776
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	3 cut(s)	262, 586, 949
XmnI	GAANNNNTTC	2 cut(s)	330, 873
XspI	CTAG	2 cut(s)	63, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.