Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

70403 .. 77707

Gene Structure 7305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

atggatgatagaacctttgtgtctggaaatggagatgaggaaccacagtttcccccattggctaggcagggttctaattacaatctaactttggattgtaatgaggttcaaagcaatttgggcaatataagcaagcctttgaatacaaatatggcacatttggatgagttacttaaaaatgtgatatcagttgatcaagaagggcagctaaacccttcttcttctccttcttcctcactgcccacttcactttttcttgggaatttcaatttgaatggaccattaatgagcagtaagaagaaaactatggatcaggtatggaaggaaattgttcatcatgatcatcatcctctcaatctcaattccgctgcagccaatgaatctttgcatcatcaaagaatgacaactattggagaatcaacatcagcaacaacaccacctgaccatctcctagttcgagcaggtatcctaaatgctcatccaacgatgcccattgatccaacagctgtggtatcgcagcaagcagattggtttcagttccaagttgctgctgctgctgctcagcagcaaatgacaatgttggactcgaatttcaaggtttgtgagtcagtatttgagaactcttcatcagctatgaatcttgacacttactctgagaatcatcaagtgggtatgtcaattccaatgccagcaatatcaacagcatcatcttcagagtctcaggcaactcatgcccagaggaagcgcaattactcagatgaaatgaaggagaaaagtattgagaggaggcagaagaggatgatcaaaaacagagattcagatctccaagcaaaccaaaccaaccaaagacaaagctcagtacgactctctctgctcggtctcgaccttcaggttcagagattttgttcttgtacgttgagtgcgtccgtacaaatggagaccaaaaagagtggtcatggtgaggttagggttggagaggtctggttgctgacgtgcgcttgggacgttcttgccactctgcttacctcagccttgctttctttagctcaggatacctcaacttgtggaccaaaaaaccgtggagccaatgagaatgaatattcctactcggaagcagttgatggtgatgaagaaaagaacaatgatggtggctttggggaacccgaagaggaagaaggagctgggaacaattctgaagatgaagaaggagctgggaacaattctaatggtaaaagcaacaacagttccaaagccggggctggaggcgatggggatgaaggagctgggaacaattctaatggtaaaagcaacaacagttccaaagccggggctggaggcgatgggggtgaagaagatgaagaggaggacgatatcaacaaccgtgatgataatgatgatggcgaagtagatggagatgaggacaaggacgatgatgaagatgaagacaacgaggacgaggatgaaggtgaggacaaggatgaggaagaaattgtagaagaagatgaagaagacgaagaagaagacgaagaagaagaggcccttcagcccccaaagaagcggaaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

522

Amino Acids

56.93

Weight (kDa)

4.3

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
AciI	CCGC	2 cut(s)	366, 1558
AclWI	GGATC	2 cut(s)	318, 491
AcsI	RAATTY	2 cut(s)	262, 589
AcuI	CTGAAG	4 cut(s)	696, 872, 1215, 1526
AfaI	GTAC	3 cut(s)	861, 913, 930
AfiI	CCNNNNNNNGG	2 cut(s)	1254, 1326
AgsI	TTSAA	5 cut(s)	110, 142, 268, 274, 595
AjiI	CACGTC	1 cut(s)	993
AluBI	AGCT	8 cut(s)	208, 506, 632, 855, 1046, 1181, 1211, 1283
AluI	AGCT	8 cut(s)	208, 506, 632, 855, 1046, 1181, 1211, 1283
Alw26I	GTCTC	3 cut(s)	723, 884, 932
AlwI	GGATC	2 cut(s)	318, 491
AoxI	GGCC	1 cut(s)	1536
ApeKI	GCWGC	9 cut(s)	205, 368, 371, 517, 548, 551, 554, 557, 565
ApoI	RAATTY	2 cut(s)	262, 589
AseI	ATTAAT	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	747, 998
AspS9I	GGNCC	3 cut(s)	278, 1067, 1537
AsuC2I	CCSGG	2 cut(s)	1255, 1327
AsuHPI	GGTGA	4 cut(s)	971, 1136, 1358, 1478
AvaII	GGWCC	2 cut(s)	278, 1067
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BbsI	GAAGAC	3 cut(s)	1449, 1515, 1527
BbvCI	CCTCAGC	1 cut(s)	1027
BbvI	GCAGC	9 cut(s)	217, 355, 383, 529, 535, 538, 541, 544, 577
BccI	CCATC	7 cut(s)	453, 1115, 1139, 1262, 1334, 1391, 1403
BciVI	GTATCC	2 cut(s)	476, 1045
BclI	TGATCA	3 cut(s)	193, 340, 801
BcnI	CCSGG	2 cut(s)	1255, 1327
BcoDI	GTCTC	3 cut(s)	723, 884, 932
BfaI	CTAG	2 cut(s)	63, 452
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	452
BfuI	GTATCC	2 cut(s)	476, 1045
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	9 cut(s)	206, 369, 372, 518, 549, 552, 555, 558, 566
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	9 cut(s)	207, 370, 373, 519, 550, 553, 556, 559, 567
Bme1390I	CCNGG	2 cut(s)	1255, 1327
Bme18I	GGWCC	2 cut(s)	278, 1067
BmgBI	CACGTC	1 cut(s)	993
BmgT120I	GGNCC	3 cut(s)	278, 1067, 1537
BmiI	GGNNCC	3 cut(s)	42, 1084, 1161
BmrFI	CCNGG	2 cut(s)	1255, 1327
BmsI	GCATC	3 cut(s)	397, 477, 713
BpiI	GAAGAC	3 cut(s)	1449, 1515, 1527
BpmI	CTGGAG	2 cut(s)	1281, 1353
Bpu10I	CCTNAGC	2 cut(s)	1027, 1047
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuMI	CCSGG	2 cut(s)	1255, 1327
BsaBI	GATNNNNATC	2 cut(s)	345, 819
BsaI	GGTCTC	2 cut(s)	884, 932
BsaJI	CCNNGG	3 cut(s)	1078, 1254, 1326
Bsc4I	CCNNNNNNNGG	2 cut(s)	1254, 1326
Bse8I	GATNNNNATC	2 cut(s)	345, 819
BseDI	CCNNGG	3 cut(s)	1078, 1254, 1326
BseGI	GGATG	8 cut(s)	10, 169, 346, 478, 804, 1279, 1465, 1483
BseJI	GATNNNNATC	2 cut(s)	345, 819
BseLI	CCNNNNNNNGG	2 cut(s)	1254, 1326
BseMII	CTCAG	7 cut(s)	575, 645, 734, 768, 870, 1041, 1061
BseRI	GAGGAG	2 cut(s)	799, 1376
BseXI	GCAGC	9 cut(s)	217, 355, 383, 529, 535, 538, 541, 544, 577
BseYI	CCCAGC	3 cut(s)	1181, 1211, 1283
BshFI	GGCC	1 cut(s)	1538
BsiSI	CCGG	2 cut(s)	1254, 1326
BslFI	GGGAC	1 cut(s)	1016
BslI	CCNNNNNNNGG	2 cut(s)	1254, 1326
BsmAI	GTCTC	3 cut(s)	723, 884, 932
BsmFI	GGGAC	1 cut(s)	1016
BsnI	GGCC	1 cut(s)	1538
Bso31I	GGTCTC	2 cut(s)	884, 932
Bsp143I	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	2 cut(s)	366, 1558
BspANI	GGCC	1 cut(s)	1538
BspCNI	CTCAG	7 cut(s)	574, 646, 733, 767, 869, 1040, 1060
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	42, 1084, 1161
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	318, 491
BspTNI	GGTCTC	2 cut(s)	884, 932
BssECI	CCNNGG	3 cut(s)	1078, 1254, 1326
BssMI	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
Bst4CI	ACNGT	5 cut(s)	48, 1079, 1244, 1316, 1382
Bst6I	CTCTTC	5 cut(s)	628, 788, 1161, 1353, 1527
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	134, 522, 690
BstDEI	CTNAG	7 cut(s)	561, 654, 720, 754, 856, 1027, 1047
BstDSI	CCRYGG	1 cut(s)	1078
BstF5I	GGATG	8 cut(s)	10, 169, 346, 478, 804, 1279, 1465, 1483
BstHHI	GCGC	2 cut(s)	747, 998
BstKTI	GATC	6 cut(s)	196, 313, 343, 499, 804, 823
BstMAI	GTCTC	3 cut(s)	723, 884, 932
BstMBI	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 129, 554, 557, 731
BstSCI	CCNGG	2 cut(s)	1253, 1325
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	9 cut(s)	217, 355, 383, 529, 535, 538, 541, 544, 577
BstV2I	GAAGAC	3 cut(s)	1449, 1515, 1527
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuI	GTATCC	2 cut(s)	476, 1045
BsuRI	GGCC	1 cut(s)	1538
BtgI	CCRYGG	1 cut(s)	1078
BtgZI	GCGATG	2 cut(s)	1281, 1353
BtrI	CACGTC	1 cut(s)	993
BtsCI	GGATG	8 cut(s)	10, 169, 346, 478, 804, 1279, 1465, 1483
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	3 cut(s)	134, 522, 690
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	747, 998
Cfr13I	GGNCC	3 cut(s)	278, 1067, 1537
CseI	GACGC	1 cut(s)	912
Csp6I	GTAC	3 cut(s)	860, 912, 929
CspCI	CAANNNNNGTGG	6 cut(s)	489, 524, 931, 966, 1129, 1164
CviAII	CATG	3 cut(s)	338, 731, 956
CviQI	GTAC	3 cut(s)	860, 912, 929
DdeI	CTNAG	7 cut(s)	561, 654, 720, 754, 856, 1027, 1047
DpnI	GATC	6 cut(s)	195, 312, 342, 498, 803, 822
DpnII	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
Eam1104I	CTCTTC	5 cut(s)	628, 788, 1161, 1353, 1527
EarI	CTCTTC	5 cut(s)	628, 788, 1161, 1353, 1527
Eco31I	GGTCTC	2 cut(s)	884, 932
Eco32I	GATATC	2 cut(s)	186, 1372
Eco47I	GGWCC	2 cut(s)	278, 1067
Eco57I	CTGAAG	4 cut(s)	696, 872, 1215, 1526
EcoO109I	RGGNCCY	1 cut(s)	1537
EcoRV	GATATC	2 cut(s)	186, 1372
FaeI	CATG	3 cut(s)	341, 734, 959
FaiI	YATR	9 cut(s)	128, 152, 308, 319, 339, 635, 674, 732, 957
FalI	AAGNNNNNCTT	4 cut(s)	121, 153, 1524, 1556
FaqI	GGGAC	1 cut(s)	1016
FatI	CATG	3 cut(s)	337, 730, 955
FbaI	TGATCA	3 cut(s)	193, 340, 801
Fnu4HI	GCNGC	9 cut(s)	206, 369, 372, 518, 549, 552, 555, 558, 566
FokI	GGATG	8 cut(s)	17, 176, 333, 465, 811, 1286, 1472, 1490
Fsp4HI	GCNGC	9 cut(s)	206, 369, 372, 518, 549, 552, 555, 558, 566
FspBI	CTAG	2 cut(s)	63, 452
GlaI	GCGC	2 cut(s)	746, 997
GluI	GCNGC	9 cut(s)	206, 369, 372, 518, 549, 552, 555, 558, 566
GsaI	CCCAGC	3 cut(s)	1185, 1215, 1287
GsuI	CTGGAG	2 cut(s)	1281, 1353
HaeIII	GGCC	1 cut(s)	1538
HapII	CCGG	2 cut(s)	1254, 1326
HgaI	GACGC	1 cut(s)	912
HhaI	GCGC	2 cut(s)	747, 998
Hin1II	CATG	3 cut(s)	341, 734, 959
Hin6I	GCGC	2 cut(s)	745, 996
HinP1I	GCGC	2 cut(s)	745, 996
HinfI	GANTC	9 cut(s)	380, 416, 584, 605, 637, 658, 716, 815, 864
HpaII	CCGG	2 cut(s)	1254, 1326
HphI	GGTGA	4 cut(s)	971, 1136, 1358, 1478
Hpy166II	GTNNAC	1 cut(s)	1067
Hpy188I	TCNGA	7 cut(s)	655, 715, 757, 820, 897, 1111, 1195
Hpy188III	TCNNGA	6 cut(s)	24, 197, 338, 641, 881, 1049
Hpy8I	GTNNAC	1 cut(s)	1067
HpyCH4III	ACNGT	5 cut(s)	48, 1079, 1244, 1316, 1382
HpyCH4IV	ACGT	3 cut(s)	914, 992, 1005
HpyCH4V	TGCA	2 cut(s)	371, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 129, 554, 557, 731
HpyF3I	CTNAG	7 cut(s)	561, 654, 720, 754, 856, 1027, 1047
HpySE526I	ACGT	3 cut(s)	914, 992, 1005
Hsp92II	CATG	3 cut(s)	341, 734, 959
HspAI	GCGC	2 cut(s)	745, 996
Ksp22I	TGATCA	3 cut(s)	193, 340, 801
Kzo9I	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
LmnI	GCTCC	4 cut(s)	1082, 1178, 1208, 1280
Lsp1109I	GCAGC	9 cut(s)	217, 355, 383, 529, 535, 538, 541, 544, 577
LweI	GCATC	3 cut(s)	397, 477, 713
MaeI	CTAG	2 cut(s)	63, 452
MaeII	ACGT	3 cut(s)	914, 992, 1005
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	6 cut(s)	195, 312, 342, 498, 803, 822
MboI	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
MflI	RGATCY	1 cut(s)	820
MlyI	GAGTC	4 cut(s)	578, 614, 725, 858
MmeI	TCCRAC	4 cut(s)	506, 524, 561, 952
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	174, 284
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	368, 506
MspI	CCGG	2 cut(s)	1254, 1326
MspR9I	CCNGG	2 cut(s)	1255, 1327
MwoI	GCNNNNNNNGC	5 cut(s)	120, 129, 554, 557, 731
NciI	CCSGG	2 cut(s)	1255, 1327
NdeII	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
NlaIII	CATG	3 cut(s)	341, 734, 959
NlaIV	GGNNCC	3 cut(s)	42, 1084, 1161
PagI	TCATGA	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	920
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	5 cut(s)	380, 416, 637, 658, 815
PkrI	GCNGC	9 cut(s)	207, 370, 373, 519, 550, 553, 556, 559, 567
PleI	GAGTC	4 cut(s)	578, 613, 724, 858
PpsI	GAGTC	4 cut(s)	578, 613, 724, 858
PshBI	ATTAAT	1 cut(s)	284
PspFI	CCCAGC	3 cut(s)	1181, 1211, 1283
PspN4I	GGNNCC	3 cut(s)	42, 1084, 1161
PspPI	GGNCC	3 cut(s)	278, 1067, 1537
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	3 cut(s)	861, 913, 930
RsaNI	GTAC	3 cut(s)	860, 912, 929
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	174, 284
SatI	GCNGC	9 cut(s)	206, 369, 372, 518, 549, 552, 555, 558, 566
Sau3AI	GATC	6 cut(s)	193, 310, 340, 496, 801, 820
Sau96I	GGNCC	3 cut(s)	278, 1067, 1537
SchI	GAGTC	4 cut(s)	578, 614, 725, 858
ScrFI	CCNGG	2 cut(s)	1255, 1327
SfaNI	GCATC	3 cut(s)	397, 477, 713
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	278, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	162
SsiI	CCGC	2 cut(s)	366, 1558
SspI	AATATT	1 cut(s)	1100
SspMI	CTAG	2 cut(s)	63, 452
StyD4I	CCNGG	2 cut(s)	1253, 1325
TaaI	ACNGT	5 cut(s)	48, 1079, 1244, 1316, 1382
TaiI	ACGT	3 cut(s)	917, 995, 1008
TaqI	TCGA	3 cut(s)	457, 587, 882
TaqII	GACCGA	1 cut(s)	866
TfiI	GAWTC	5 cut(s)	380, 416, 637, 658, 815
Tru1I	TTAA	2 cut(s)	174, 284
Tru9I	TTAA	2 cut(s)	174, 284
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	9 cut(s)	205, 368, 371, 517, 548, 551, 554, 557, 565
TspGWI	ACGGA	1 cut(s)	916
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	278, 1067
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	2 cut(s)	262, 589
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	63, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.