Rh7AG489500

Phosphopantothenoylcysteine decarboxylase subunit VHS3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004236
Physical Location & Seq
Reverse (-)
68975910 .. 68977981
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG489500.1

Sequence Viewer

Length: 438 bp
ATGGTTCAGGGATTTTGTTCTTGTACGTTGAGTGCGTCCGTACAAATGGAGACCAAAAAGAGTGGTCATGGTGAGGTTAGGGTTGGAGAGGTCTGGTTGCTGACGTGCGCTTGGGACGTTCTTGCCACTCTGCTTACCTCAGCCTTGCTTTCTTTAGCTCAGCATGCCTCAACTTGTGGACCAAAAAACCGGGGAGCCAATGAGAATGAATATTCCTACTCGGAAGCAGTTGATGGTGATGAAGAAAAGAACAATGATGGTGGCTTTGGGGACCCCGAAGAGGAAGAAGGAGCTGGGAACAATTCTGAAGAGGAAGAAGGAGCTGGGAACAATTCTAATGGTAAAAGCAACAACAGTTCCAAAGCCGGGGCTGGAGGCGATGGGGTTATGTATCAGAAGGTTATTTCTTGCAATAATATTTACCAAGAAGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.28

Weight (kDa)

4.29

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 25, 42
AfiI CCNNNNNNNGG 2 cut(s) 280, 366
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 3 cut(s) 158, 293, 323
AluI AGCT 3 cut(s) 158, 293, 323
Alw26I GTCTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 179, 271
AsuC2I CCSGG 2 cut(s) 191, 367
AsuHPI GGTGA 2 cut(s) 83, 248
AvaII GGWCC 2 cut(s) 179, 271
BbvCI CCTCAGC 1 cut(s) 139
BccI CCATC 3 cut(s) 227, 251, 374
BcnI CCSGG 2 cut(s) 191, 367
BcoDI GTCTC 1 cut(s) 44
BlpI GCTNAGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 191, 367
Bme18I GGWCC 2 cut(s) 179, 271
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 179, 271
BmiI GGNNCC 3 cut(s) 196, 272, 273
BmrFI CCNGG 2 cut(s) 191, 367
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 159
BpuMI CCSGG 2 cut(s) 191, 367
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 190, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 366
BseDI CCNNGG 2 cut(s) 190, 366
BseLI CCNNNNNNNGG 2 cut(s) 280, 366
BseMII CTCAG 2 cut(s) 153, 173
BseYI CCCAGC 2 cut(s) 293, 323
BsiSI CCGG 2 cut(s) 190, 366
BslFI GGGAC 2 cut(s) 128, 284
BslI CCNNNNNNNGG 2 cut(s) 280, 366
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 128, 284
Bso31I GGTCTC 1 cut(s) 44
Bsp1720I GCTNAGC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 152, 172
BspLI GGNNCC 3 cut(s) 196, 272, 273
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 190, 366
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 273, 303
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 139, 159
BstHHI GCGC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 189, 365
BtgZI GCGATG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 179, 271
CseI GACGC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 24, 41
CspCI CAANNNNNGTGG 4 cut(s) 43, 78, 241, 276
CviAII CATG 2 cut(s) 68, 164
CviJI RGCY 8 cut(s) 143, 158, 197, 264, 293, 323, 365, 371
CviKI_1 RGCY 8 cut(s) 143, 158, 197, 264, 293, 323, 365, 371
CviQI GTAC 2 cut(s) 24, 41
DdeI CTNAG 2 cut(s) 139, 159
Eam1104I CTCTTC 2 cut(s) 273, 303
EarI CTCTTC 2 cut(s) 273, 303
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 179, 271
Eco57I CTGAAG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 271
FaeI CATG 2 cut(s) 71, 167
FaiI YATR 4 cut(s) 69, 165, 389, 436
FaqI GGGAC 2 cut(s) 128, 284
FatI CATG 2 cut(s) 67, 163
GlaI GCGC 1 cut(s) 109
GsaI CCCAGC 2 cut(s) 297, 327
GsuI CTGGAG 1 cut(s) 393
HapII CCGG 2 cut(s) 190, 366
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 71, 167
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 2 cut(s) 190, 366
HphI GGTGA 2 cut(s) 83, 248
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 223, 307, 396
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 281, 311, 391
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 3 cut(s) 26, 104, 117
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 139, 159
HpySE526I ACGT 3 cut(s) 26, 104, 117
Hsp92II CATG 2 cut(s) 71, 167
HspAI GCGC 1 cut(s) 108
KflI GGGWCCC 1 cut(s) 271
LmnI GCTCC 3 cut(s) 194, 290, 320
LpnPI CCDG 6 cut(s) 79, 203, 279, 309, 357, 379
MaeII ACGT 3 cut(s) 26, 104, 117
MboII GAAGA 5 cut(s) 254, 290, 296, 320, 326
MluCI AATT 2 cut(s) 301, 331
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 7 cut(s) 67, 82, 148, 178, 274, 304, 368
MspI CCGG 2 cut(s) 190, 366
MspR9I CCNGG 2 cut(s) 191, 367
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 2 cut(s) 191, 367
NlaIII CATG 2 cut(s) 71, 167
NlaIV GGNNCC 3 cut(s) 196, 272, 273
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspFI CCCAGC 2 cut(s) 293, 323
PspN4I GGNNCC 3 cut(s) 196, 272, 273
PspPI GGNCC 2 cut(s) 179, 271
PspPPI RGGWCCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 25, 42
RsaNI GTAC 2 cut(s) 24, 41
Sau96I GGNCC 2 cut(s) 179, 271
ScrFI CCNGG 2 cut(s) 191, 367
SinI GGWCC 2 cut(s) 179, 271
SphI GCATGC 1 cut(s) 167
Sse9I AATT 2 cut(s) 301, 331
SspI AATATT 2 cut(s) 212, 418
StyD4I CCNGG 2 cut(s) 189, 365
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 3 cut(s) 29, 107, 120
TasI AATT 2 cut(s) 301, 331
TspDTI ATGAA 2 cut(s) 222, 255
TspGWI ACGGA 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 179, 271
XceI RCATGY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.