Rroxscaffold_3G00220160
BZIP Family

ABSCISIC ACID-INSENSITIVE 5-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
2386472 .. 2387350
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220160.1

Sequence Viewer

Length: 879 bp
ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTTCCCCCATTGGCTAGGCAGGGTTCTAATTACAATCTAACTTTGGATTGTAATGAGGTTCAAAGAAATTTGGGCAATATAAGCAAGCCTTTGAATACAAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAACTGCTGCAAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGGACCATTAATGAGCAGTAAGAAGAAAACTACGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTCTCAATCTCAATTCCGCTGCAGCCGATGAATTTTTGCATCATCAAAGAATGACAGCTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCCAACGATGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGCACTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCGGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGTCATCTTTGAATCTTACAGTACAAGTTAG

Protein Analysis

292

Amino Acids

32.49

Weight (kDa)

6.3

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 458, 838
AciI CCGC 1 cut(s) 372
AclWI GGATC 2 cut(s) 324, 497
AcsI RAATTY 4 cut(s) 115, 268, 386, 592
AcuI CTGAAG 1 cut(s) 699
AfaI GTAC 1 cut(s) 871
AgsI TTSAA 6 cut(s) 110, 142, 274, 280, 598, 860
AluBI AGCT 3 cut(s) 413, 512, 635
AluI AGCT 3 cut(s) 413, 512, 635
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 2 cut(s) 324, 497
ApoI RAATTY 4 cut(s) 115, 268, 386, 592
AseI ATTAAT 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BccI CCATC 1 cut(s) 459
BciVI GTATCC 1 cut(s) 482
BclI TGATCA 3 cut(s) 193, 346, 804
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 2 cut(s) 63, 458
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 2 cut(s) 458, 838
BfuI GTATCC 1 cut(s) 482
BlpI GCTNAGC 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 3 cut(s) 403, 483, 716
Bpu1102I GCTNAGC 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 351
BseGI GGATG 6 cut(s) 10, 169, 352, 484, 766, 807
BseJI GATNNNNATC 1 cut(s) 351
BseMII CTCAG 3 cut(s) 578, 648, 737
BseRI GAGGAG 1 cut(s) 802
BsmAI GTCTC 1 cut(s) 726
Bsp143I GATC 5 cut(s) 193, 316, 346, 502, 804
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 3 cut(s) 577, 649, 736
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 2 cut(s) 458, 838
BspPI GGATC 2 cut(s) 324, 497
BssMI GATC 5 cut(s) 193, 316, 346, 502, 804
Bst4CI ACNGT 2 cut(s) 48, 869
Bst6I CTCTTC 2 cut(s) 631, 791
BstAPI GCANNNNNTGC 2 cut(s) 211, 734
BstC8I GCNNGC 3 cut(s) 134, 528, 693
BstDEI CTNAG 3 cut(s) 564, 657, 723
BstF5I GGATG 6 cut(s) 10, 169, 352, 484, 766, 807
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 5 cut(s) 196, 319, 349, 505, 807
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 5 cut(s) 193, 316, 346, 502, 804
BstMWI GCNNNNNNNGC 5 cut(s) 129, 211, 560, 701, 734
BstSFI CTRYAG 1 cut(s) 375
BsuI GTATCC 1 cut(s) 482
BtsCI GGATG 6 cut(s) 10, 169, 352, 484, 766, 807
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 2 cut(s) 458, 838
Cac8I GCNNGC 3 cut(s) 134, 528, 693
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 750
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 870
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 2 cut(s) 344, 734
CviJI RGCY 6 cut(s) 62, 136, 380, 413, 512, 635
CviKI_1 RGCY 6 cut(s) 62, 136, 380, 413, 512, 635
CviQI GTAC 1 cut(s) 870
DdeI CTNAG 3 cut(s) 564, 657, 723
DpnI GATC 5 cut(s) 195, 318, 348, 504, 806
DpnII GATC 5 cut(s) 193, 316, 346, 502, 804
Eam1104I CTCTTC 2 cut(s) 631, 791
EarI CTCTTC 2 cut(s) 631, 791
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 699
EcoRV GATATC 1 cut(s) 186
FaeI CATG 2 cut(s) 347, 737
FaiI YATR 7 cut(s) 128, 152, 325, 345, 638, 677, 735
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 2 cut(s) 343, 733
FbaI TGATCA 3 cut(s) 193, 346, 804
FokI GGATG 6 cut(s) 17, 176, 339, 471, 773, 814
FspBI CTAG 2 cut(s) 63, 458
GlaI GCGC 1 cut(s) 749
HhaI GCGC 1 cut(s) 750
Hin1II CATG 2 cut(s) 347, 737
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HinfI GANTC 7 cut(s) 422, 608, 640, 661, 719, 818, 860
Hpy188I TCNGA 3 cut(s) 658, 718, 760
Hpy188III TCNNGA 4 cut(s) 24, 197, 344, 644
HpyAV CCTTC 5 cut(s) 194, 231, 243, 322, 763
HpyCH4III ACNGT 2 cut(s) 48, 869
HpyCH4V TGCA 4 cut(s) 214, 377, 394, 586
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 211, 560, 701, 734
HpyF3I CTNAG 3 cut(s) 564, 657, 723
Hsp92II CATG 2 cut(s) 347, 737
HspAI GCGC 1 cut(s) 748
Ksp22I TGATCA 3 cut(s) 193, 346, 804
Kzo9I GATC 5 cut(s) 193, 316, 346, 502, 804
LpnPI CCDG 9 cut(s) 9, 53, 305, 453, 459, 705, 710, 752, 833
LweI GCATC 3 cut(s) 403, 483, 716
MaeI CTAG 2 cut(s) 63, 458
MaeIII GTNAC 1 cut(s) 168
MalI GATC 5 cut(s) 195, 318, 348, 504, 806
MboI GATC 5 cut(s) 193, 316, 346, 502, 804
MboII GAAGA 7 cut(s) 216, 219, 228, 316, 618, 705, 808
MlyI GAGTC 3 cut(s) 617, 728, 827
MmeI TCCRAC 2 cut(s) 512, 530
MnlI CCTC 8 cut(s) 31, 97, 250, 366, 735, 780, 783, 792
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 2 cut(s) 174, 290
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 374, 512
MwoI GCNNNNNNNGC 5 cut(s) 129, 211, 560, 701, 734
NdeII GATC 5 cut(s) 193, 316, 346, 502, 804
NlaIII CATG 2 cut(s) 347, 737
NlaIV GGNNCC 1 cut(s) 42
PagI TCATGA 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 422, 640, 661, 860
PleI GAGTC 3 cut(s) 616, 727, 826
PpsI GAGTC 3 cut(s) 616, 727, 826
PshBI ATTAAT 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 871
RsaNI GTAC 1 cut(s) 870
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 174, 290
Sau3AI GATC 5 cut(s) 193, 316, 346, 502, 804
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 3 cut(s) 617, 728, 827
SfaNI GCATC 3 cut(s) 403, 483, 716
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 162
SsiI CCGC 1 cut(s) 372
SspMI CTAG 2 cut(s) 63, 458
TaaI ACNGT 2 cut(s) 48, 869
TaqI TCGA 2 cut(s) 463, 590
TatI WGTACW 1 cut(s) 869
TfiI GAWTC 4 cut(s) 422, 640, 661, 860
Tru1I TTAA 2 cut(s) 174, 290
Tru9I TTAA 2 cut(s) 174, 290
TscAI CASTG 1 cut(s) 249
TspDTI ATGAA 6 cut(s) 329, 399, 618, 653, 777, 782
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 284
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 4 cut(s) 115, 268, 386, 592
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 2 cut(s) 63, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.