Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Forward (+)

21201396 .. 21202990

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1174400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGAGACCAAAAGCCGTACGTCGACGGGTCGTGGTGCTTCTGCTGCCGTTCAACTACTTGAAGCTACGTTTGGTCAGTTCTTGTTGCTAACGTGCGCCTGGGATGCTCTTCTTGCTAATCTGCTCACCGCCTCTGCCTTGCTTTCTCTGCCTCAAGTGAGATCCTTCTGCGCTCTCAACCACCTGTGGACAGAAAAGTCACGGCGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

10.07

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	53, 62
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	98, 173
AsuHPI	GGTGA	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	100
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	31
BsiWI	CGTACG	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	98, 173
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 104, 113, 148
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	109
CfoI	GCGC	2 cut(s)	98, 173
Csp6I	GTAC	1 cut(s)	18
CviJI	RGCY	2 cut(s)	15, 65
CviKI_1	RGCY	2 cut(s)	15, 65
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	97, 172
GluI	GCNGC	1 cut(s)	45
HhaI	GCGC	2 cut(s)	98, 173
Hin6I	GCGC	2 cut(s)	96, 171
HinP1I	GCGC	2 cut(s)	96, 171
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	24, 189
Hpy8I	GTNNAC	2 cut(s)	24, 189
Hpy99I	CGWCG	3 cut(s)	25, 28, 210
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	20, 68, 92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 104, 113, 148
HpySE526I	ACGT	3 cut(s)	20, 68, 92
HspAI	GCGC	2 cut(s)	96, 171
Kzo9I	GATC	1 cut(s)	161
LguI	GCTCTTC	1 cut(s)	114
LpnPI	CCDG	3 cut(s)	85, 112, 197
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	3 cut(s)	20, 68, 92
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	161
MnlI	CCTC	2 cut(s)	142, 162
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	4 cut(s)	44, 104, 113, 148
NdeII	GATC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	114
Pfl23II	CGTACG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspLI	CGTACG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	5 cut(s)	23, 67, 71, 95, 186
SfaNI	GCATC	1 cut(s)	94
SgrDI	CGTCGACG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SsiI	CCGC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	98
TaiI	ACGT	3 cut(s)	23, 71, 95
TaqI	TCGA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.