Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

67739419 .. 67741489

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG473600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTCCCCCCATTGGCTAGACAGGGTTCTAATTACAATCTGACTCCAGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACTAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTGCTGCAAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGCACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTCTCAATCTCAATTCCGCTGCAGCCAATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCTTAAATGCTCATCCAATGATGCCCATTGATCCAACAGCTGTGGTATCGCAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGGACTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCGGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTTATACCGATCAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTAAATACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

330

Amino Acids

36.95

Weight (kDa)

7.91

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	257 - 302	2.8e-09	Basic region leucine zipper
bZIP_1	PF00170	259 - 302	2.3e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	312, 485
AcsI	RAATTY	2 cut(s)	256, 580
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	98, 130, 262, 268, 586, 933
AjnI	CCWGG	1 cut(s)	890
AloI	GAACNNNNNNTCC	4 cut(s)	32, 33, 64, 65
AluBI	AGCT	4 cut(s)	196, 500, 623, 983
AluI	AGCT	4 cut(s)	196, 500, 623, 983
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	312, 485
AlwNI	CAGNNNCTG	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	256, 580
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	324, 867
AspLEI	GCGC	2 cut(s)	738, 972
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	892
BclI	TGATCA	3 cut(s)	181, 334, 792
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	2 cut(s)	63, 446
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	4 cut(s)	391, 471, 704, 981
BpmI	CTGGAG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	892
BseGI	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	566, 636, 725
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	790
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	274
Bsp143I	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	565, 637, 724
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	312, 485
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Bst2UI	CCWGG	1 cut(s)	892
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	619, 779
BstAPI	GCANNNNNTGC	2 cut(s)	199, 722
BstC8I	GCNNGC	4 cut(s)	122, 516, 681, 837
BstDEI	CTNAG	4 cut(s)	552, 645, 711, 965
BstF5I	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BstHHI	GCGC	2 cut(s)	738, 972
BstKTI	GATC	6 cut(s)	184, 307, 337, 493, 795, 850
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
BstNI	CCWGG	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	1 cut(s)	363
BtsCI	GGATG	6 cut(s)	10, 157, 340, 472, 754, 795
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	4 cut(s)	122, 516, 681, 837
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	738, 972
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	3 cut(s)	332, 722, 949
CviJI	RGCY	9 cut(s)	62, 124, 196, 368, 500, 623, 839, 895, 983
CviKI_1	RGCY	9 cut(s)	62, 124, 196, 368, 500, 623, 839, 895, 983
DdeI	CTNAG	4 cut(s)	552, 645, 711, 965
DpnI	GATC	6 cut(s)	183, 306, 336, 492, 794, 849
DpnII	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
Eam1104I	CTCTTC	2 cut(s)	619, 779
EarI	CTCTTC	2 cut(s)	619, 779
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	890
EcoRV	GATATC	1 cut(s)	174
FaeI	CATG	3 cut(s)	335, 725, 952
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	3 cut(s)	331, 721, 948
FbaI	TGATCA	3 cut(s)	181, 334, 792
FokI	GGATG	6 cut(s)	17, 164, 327, 459, 761, 802
FspBI	CTAG	2 cut(s)	63, 446
GlaI	GCGC	2 cut(s)	737, 971
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	738, 972
Hin1II	CATG	3 cut(s)	335, 725, 952
Hin6I	GCGC	2 cut(s)	736, 970
HinP1I	GCGC	2 cut(s)	736, 970
HinfI	GANTC	9 cut(s)	88, 374, 410, 575, 596, 628, 649, 707, 806
Hpy188I	TCNGA	4 cut(s)	87, 646, 706, 748
Hpy188III	TCNNGA	4 cut(s)	24, 185, 332, 632
HpyAV	CCTTC	5 cut(s)	182, 219, 231, 310, 751
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	202, 272, 365, 382
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
HpyF3I	CTNAG	4 cut(s)	552, 645, 711, 965
Hsp92II	CATG	3 cut(s)	335, 725, 952
HspAI	GCGC	2 cut(s)	736, 970
Ksp22I	TGATCA	3 cut(s)	181, 334, 792
Kzo9I	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
LweI	GCATC	4 cut(s)	391, 471, 704, 981
MaeI	CTAG	2 cut(s)	63, 446
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	6 cut(s)	183, 306, 336, 492, 794, 849
MboI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
MboII	GAAGA	8 cut(s)	204, 207, 216, 304, 606, 693, 796, 921
MlyI	GAGTC	5 cut(s)	82, 569, 605, 716, 815
MmeI	TCCRAC	3 cut(s)	518, 552, 834
MnlI	CCTC	8 cut(s)	31, 238, 354, 723, 768, 771, 780, 904
MroXI	GAANNNNTTC	2 cut(s)	324, 867
MseI	TTAA	3 cut(s)	162, 278, 464
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	3 cut(s)	196, 362, 500
MspR9I	CCNGG	1 cut(s)	892
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	892
MwoI	GCNNNNNNNGC	7 cut(s)	108, 117, 199, 548, 689, 722, 901
NdeII	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
NlaIII	CATG	3 cut(s)	335, 725, 952
NlaIV	GGNNCC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	331
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	2 cut(s)	324, 867
PfeI	GAWTC	4 cut(s)	374, 410, 628, 649
PleI	GAGTC	5 cut(s)	82, 569, 604, 715, 814
PpsI	GAGTC	5 cut(s)	82, 569, 604, 715, 814
PshBI	ATTAAT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	890
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	196, 500
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	162, 278, 464
Sau3AI	GATC	6 cut(s)	181, 304, 334, 490, 792, 847
SchI	GAGTC	5 cut(s)	82, 569, 605, 716, 815
ScrFI	CCNGG	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	391, 471, 704, 981
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	2 cut(s)	63, 446
StyD4I	CCNGG	1 cut(s)	890
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	451, 578
TfiI	GAWTC	4 cut(s)	374, 410, 628, 649
Tru1I	TTAA	3 cut(s)	162, 278, 464
Tru9I	TTAA	3 cut(s)	162, 278, 464
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	6 cut(s)	317, 387, 606, 641, 765, 770
TspRI	CASTG	1 cut(s)	237
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	2 cut(s)	256, 580
XmnI	GAANNNNTTC	2 cut(s)	324, 867
XspI	CTAG	2 cut(s)	63, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.