Rw7G040960

Phosphopantothenoylcysteine decarboxylase subunit VHS3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004236
Physical Location & Seq
Reverse (-)
63897521 .. 63899748
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040960.1

Sequence Viewer

Length: 501 bp
ATGGAGACCAAAAAGAGTGGTCATGGTGAGGTTAGGGTTGGAGAGGTCTGGTTGCTGACGTGCGCTTGGGACGTTCTTGCCACTCTGCTTACCTCAGCCTTGCTTTCTTTAGCTCAGGATACCTCAACTTGTGGACCAAAAAACCGTGGAGCCAATGAGAATGAATATTCCTACTCGGAAGCAGTTGATGGTGATGAAGAAAAGAACAATGATGGTGGCTTTGGGGACCCCGAAGAGGAAGGAGCTGGGAACAATTCTGAAGATGAGGAGCTGGGAACAATTCTAATGGTAAAAGCAACAACAGTTCCAAAGCCGGGGCTGGAGGCGATGGGGTATCAACTTCGACATACCTGTCAAGAGAAAACAGAAGAGGTTTACATTTTCAAATGGTCGGGGAAGCGAACAAAGCCAAAAACAACAGAGGCAAAGAATGCGGGAGGATACTCAAAGAAGCTTAGCAATATACATACAAACAAAGAAAAAATTGTATCAGCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.1

Weight (kDa)

5.09

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 351
AciI CCGC 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 235, 314
AgsI TTSAA 1 cut(s) 385
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 4 cut(s) 113, 245, 271, 454
AluI AGCT 4 cut(s) 113, 245, 271, 454
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 134, 226
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 38, 203
AvaII GGWCC 2 cut(s) 134, 226
BbvCI CCTCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 182, 206, 322
BciVI GTATCC 2 cut(s) 112, 434
BcnI CCSGG 1 cut(s) 315
BfuI GTATCC 2 cut(s) 112, 434
BlpI GCTNAGC 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 134, 226
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 134, 226
BmiI GGNNCC 3 cut(s) 151, 227, 228
BmrFI CCNGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 2 cut(s) 94, 114
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 145, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 314
BseDI CCNNGG 2 cut(s) 145, 314
BseLI CCNNNNNNNGG 2 cut(s) 235, 314
BseMII CTCAG 2 cut(s) 108, 128
BseRI GAGGAG 1 cut(s) 281
BseYI CCCAGC 2 cut(s) 245, 271
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 83, 239
BslI CCNNNNNNNGG 2 cut(s) 235, 314
BsmFI GGGAC 2 cut(s) 83, 239
BsmI GAATGC 1 cut(s) 436
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 1 cut(s) 434
BspCNI CTCAG 2 cut(s) 107, 127
BspLI GGNNCC 3 cut(s) 151, 227, 228
BssECI CCNNGG 2 cut(s) 145, 314
Bst4CI ACNGT 2 cut(s) 146, 304
Bst6I CTCTTC 2 cut(s) 228, 363
BstAPI GCANNNNNTGC 1 cut(s) 431
BstDEI CTNAG 3 cut(s) 94, 114, 455
BstDSI CCRYGG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 406, 431
BstSCI CCNGG 1 cut(s) 313
BsuI GTATCC 2 cut(s) 112, 434
BtgI CCRYGG 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 60
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 134, 226
CspCI CAANNNNNGTGG 3 cut(s) 33, 196, 231
CviAII CATG 1 cut(s) 23
DdeI CTNAG 3 cut(s) 94, 114, 455
DrdI GACNNNNNNGTC 1 cut(s) 351
DseDI GACNNNNNNGTC 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 228, 363
EarI CTCTTC 2 cut(s) 228, 363
Eco47I GGWCC 2 cut(s) 134, 226
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 226
FaeI CATG 1 cut(s) 26
FaiI YATR 5 cut(s) 24, 348, 464, 468, 499
FaqI GGGAC 2 cut(s) 83, 239
FatI CATG 1 cut(s) 22
FauI CCCGC 1 cut(s) 427
GlaI GCGC 1 cut(s) 64
GsaI CCCAGC 2 cut(s) 249, 275
GsuI CTGGAG 1 cut(s) 341
HapII CCGG 1 cut(s) 314
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 452
HpaII CCGG 1 cut(s) 314
HphI GGTGA 2 cut(s) 38, 203
Hpy166II GTNNAC 2 cut(s) 134, 376
Hpy188I TCNGA 2 cut(s) 178, 259
Hpy188III TCNNGA 2 cut(s) 116, 356
Hpy8I GTNNAC 2 cut(s) 134, 376
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 146, 304
HpyCH4IV ACGT 2 cut(s) 59, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 406, 431
HpyF3I CTNAG 3 cut(s) 94, 114, 455
HpySE526I ACGT 2 cut(s) 59, 72
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 226
LmnI GCTCC 3 cut(s) 149, 242, 268
LpnPI CCDG 7 cut(s) 34, 101, 231, 257, 305, 327, 364
MaeII ACGT 2 cut(s) 59, 72
MboII GAAGA 4 cut(s) 209, 245, 272, 380
MluCI AATT 3 cut(s) 253, 279, 483
MmeI TCCRAC 1 cut(s) 19
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 436
MwoI GCNNNNNNNGC 2 cut(s) 406, 431
NciI CCSGG 1 cut(s) 315
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 3 cut(s) 151, 227, 228
PctI GAATGC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspFI CCCAGC 2 cut(s) 245, 271
PspN4I GGNNCC 3 cut(s) 151, 227, 228
PspPI GGNCC 2 cut(s) 134, 226
PspPPI RGGWCCY 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 134, 226
ScrFI CCNGG 1 cut(s) 315
SinI GGWCC 2 cut(s) 134, 226
Sse9I AATT 3 cut(s) 253, 279, 483
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 146, 304
TaiI ACGT 2 cut(s) 62, 75
TaqI TCGA 1 cut(s) 343
TasI AATT 3 cut(s) 253, 279, 483
TspDTI ATGAA 2 cut(s) 177, 210
VpaK11BI GGWCC 2 cut(s) 134, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.