Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004236

Physical Location & Seq

Genomic Coordinates Reverse (-)

54815647 .. 54818030

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG462600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATGATAGAACCTTTGTGTCTGGAAATGGAGATGAGGAACCACAGTTTCCCCCATTGGCTAGACAGGGTTCTAATTACAATCTGACTTTGGATTGTAATGAGGTTCAAAGCAATTTGGGCAATATAAGCAAGCCTTTGAATACTAATATGGCACATTTGGATGAGTTACTTAAAAATGTGATATCAGTTGATCAAGAAGGGCAGCTGCTGCAAAACCCTTCTTCTTCTCCTTCTTCCTCACTGCCCACTTCACTTTTTCTTGGGAATTTCAATTTGAATGCACCATTAATGAGCAGTAAGAAGAAAACTATGGATCAGGTATGGAAGGAAATTGTTCATCATGATCATCATCCTCTCAATCTCAATTCCGCTGCAGCCAATGAATCTTTGCATCATCAAAGAATGACAACTATTGGAGAATCAACATCAGCAACAACACCACCTGACCATCTCCTAGTTCGAGCAGGTATCCTAAATGCTCATCCAATGATGCCCATTGATCCAACAGCTGCGGTATCACAGCAAGCAGATTGGTTTCAGTTCCAAGTTGCTGCTGCTGCTCAGCAGCAAATGACAATGTTGGGCTCGAATTTCAAGGTTTGTGAGTCAGTATTTGAGAACTCTTCATCAGCTATGAATCTTGACACTTACTCTGAGAATCATCAAGTGGGTATGTCAATTCCAATGCCAGCAATATCAGCAGCATCATCTTCAGAGTCTCAGGCAACTCATGCCCAGAGGAAGCGCAATTACTCAGATGAAATGAAGGAGAAAAGTATTGAGAGGAGGCAGAAGAGGATGATCAAAAACAGAGAGTCAGCAGCAAGGTCAAGGGCAAGAAAGCAGGCTTATACCGATCAGTTGGAGAGTGAAGTATTTCACTTGAGAAAAACGAATACCTGGCTCAAAAAGCAAAAGGAGGTGGAGATACTCTTATCTTCAAATCCTACTAATTCCATGCCTAAATACCAACTTAGGCGCATCAGTTCAGCTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

334

Amino Acids

37.34

Weight (kDa)

7.22

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	261 - 306	2.8e-09	Basic region leucine zipper
bZIP_1	PF00170	263 - 306	2.4e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38350 FvH4_5g38350 FvH4_5g38360
malus_domestica	MD08G1174300.v1.1 MD08G1174400.v1.1 MD15G1361000.v1.1
prunus_persica	Prupe.1G508200_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1 Prupe.1G508400_v2.0.a1
pyrus_communis	pycom08g14950 pycom15g32250
rosa_chinensis	RchiOBHm_Chr7g0240371 RchiOBHm_Chr7g0240381
rosa_laevigata	RLG00000000681 RLG00000000682
rosa_multiflora	Rmu_sc0002676.1_g000010
rosa_roxburghii	Rroxscaffold_3G00220160 Rroxscaffold_3G00220180
rosa_rugosa	Rorug07G0335100 Rorug07G0335200 Rorug07G0335300 Rorug07G0335400
rosa_samantha	Rh7AG489500 Rh7AG489600 Rh7BG462500 Rh7BG462600 Rh7CG505800 Rh7CG505900 Rh7DG473500 Rh7DG473600
rosa_wichuraiana	Rw7G040960 Rw7G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	458
AciI	CCGC	2 cut(s)	372, 515
AclWI	GGATC	2 cut(s)	324, 497
AcsI	RAATTY	2 cut(s)	268, 592
AcuI	CTGAAG	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	110, 142, 274, 280, 598, 945
AjnI	CCWGG	1 cut(s)	902
AluBI	AGCT	4 cut(s)	208, 512, 635, 995
AluI	AGCT	4 cut(s)	208, 512, 635, 995
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	2 cut(s)	324, 497
AlwNI	CAGNNNCTG	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	268, 592
AseI	ATTAAT	1 cut(s)	290
Asp700I	GAANNNNTTC	2 cut(s)	336, 879
AspLEI	GCGC	2 cut(s)	750, 984
BanII	GRGCYC	1 cut(s)	590
BarI	GAAGNNNNNNTAC	2 cut(s)	737, 769
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	904
BciVI	GTATCC	1 cut(s)	482
BclI	TGATCA	3 cut(s)	193, 346, 804
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	2 cut(s)	63, 458
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	482
BlpI	GCTNAGC	1 cut(s)	564
Bme1390I	CCNGG	1 cut(s)	904
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	4 cut(s)	403, 483, 716, 993
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	907
BsaBI	GATNNNNATC	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	904
BseGI	GGATG	5 cut(s)	10, 169, 352, 484, 807
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	578, 648, 737, 771
BseRI	GAGGAG	1 cut(s)	802
BsmAI	GTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	2 cut(s)	372, 515
BspCNI	CTCAG	4 cut(s)	577, 649, 736, 770
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	324, 497
BssMI	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	631, 791
BstAPI	GCANNNNNTGC	2 cut(s)	211, 734
BstC8I	GCNNGC	4 cut(s)	134, 528, 693, 849
BstDEI	CTNAG	5 cut(s)	564, 657, 723, 757, 977
BstF5I	GGATG	5 cut(s)	10, 169, 352, 484, 807
BstHHI	GCGC	2 cut(s)	750, 984
BstKTI	GATC	6 cut(s)	196, 319, 349, 505, 807, 862
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
BstMWI	GCNNNNNNNGC	7 cut(s)	120, 129, 211, 560, 701, 734, 913
BstNI	CCWGG	1 cut(s)	904
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	482
BtsCI	GGATG	5 cut(s)	10, 169, 352, 484, 807
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	4 cut(s)	134, 528, 693, 849
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	750, 984
CviAII	CATG	3 cut(s)	344, 734, 961
DdeI	CTNAG	5 cut(s)	564, 657, 723, 757, 977
DpnI	GATC	6 cut(s)	195, 318, 348, 504, 806, 861
DpnII	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
Eam1104I	CTCTTC	2 cut(s)	631, 791
EarI	CTCTTC	2 cut(s)	631, 791
Eco24I	GRGCYC	1 cut(s)	590
Eco32I	GATATC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	590
FaeI	CATG	3 cut(s)	347, 737, 964
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	3 cut(s)	343, 733, 960
FbaI	TGATCA	3 cut(s)	193, 346, 804
FokI	GGATG	5 cut(s)	17, 176, 339, 471, 814
FriOI	GRGCYC	1 cut(s)	590
FspBI	CTAG	2 cut(s)	63, 458
GlaI	GCGC	2 cut(s)	749, 983
HhaI	GCGC	2 cut(s)	750, 984
Hin1II	CATG	3 cut(s)	347, 737, 964
Hin6I	GCGC	2 cut(s)	748, 982
HinP1I	GCGC	2 cut(s)	748, 982
HinfI	GANTC	7 cut(s)	386, 422, 608, 640, 661, 719, 818
Hpy188I	TCNGA	4 cut(s)	87, 658, 718, 760
Hpy188III	TCNNGA	4 cut(s)	24, 197, 344, 644
HpyAV	CCTTC	5 cut(s)	194, 231, 243, 322, 763
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	214, 284, 377, 394
HpyF10VI	GCNNNNNNNGC	7 cut(s)	120, 129, 211, 560, 701, 734, 913
HpyF3I	CTNAG	5 cut(s)	564, 657, 723, 757, 977
Hsp92II	CATG	3 cut(s)	347, 737, 964
HspAI	GCGC	2 cut(s)	748, 982
Ksp22I	TGATCA	3 cut(s)	193, 346, 804
Kzo9I	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
LweI	GCATC	4 cut(s)	403, 483, 716, 993
MaeI	CTAG	2 cut(s)	63, 458
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	6 cut(s)	195, 318, 348, 504, 806, 861
MboI	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
MboII	GAAGA	8 cut(s)	216, 219, 228, 316, 618, 705, 808, 933
MhlI	GDGCHC	1 cut(s)	590
MlyI	GAGTC	3 cut(s)	617, 728, 827
MmeI	TCCRAC	2 cut(s)	530, 846
MnlI	CCTC	9 cut(s)	31, 97, 250, 366, 735, 780, 783, 792, 916
MroXI	GAANNNNTTC	2 cut(s)	336, 879
MseI	TTAA	2 cut(s)	174, 290
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	3 cut(s)	208, 374, 512
MspR9I	CCNGG	1 cut(s)	904
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	904
MwoI	GCNNNNNNNGC	7 cut(s)	120, 129, 211, 560, 701, 734, 913
NdeII	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
NlaIII	CATG	3 cut(s)	347, 737, 964
NlaIV	GGNNCC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	343
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	2 cut(s)	336, 879
PfeI	GAWTC	4 cut(s)	386, 422, 640, 661
PleI	GAGTC	3 cut(s)	616, 727, 826
PpsI	GAGTC	3 cut(s)	616, 727, 826
PshBI	ATTAAT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	211
PvuII	CAGCTG	2 cut(s)	208, 512
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	174, 290
Sau3AI	GATC	6 cut(s)	193, 316, 346, 502, 804, 859
SchI	GAGTC	3 cut(s)	617, 728, 827
ScrFI	CCNGG	1 cut(s)	904
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	4 cut(s)	403, 483, 716, 993
SfcI	CTRYAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
SsiI	CCGC	2 cut(s)	372, 515
SspMI	CTAG	2 cut(s)	63, 458
StyD4I	CCNGG	1 cut(s)	902
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	463, 590
TfiI	GAWTC	4 cut(s)	386, 422, 640, 661
Tru1I	TTAA	2 cut(s)	174, 290
Tru9I	TTAA	2 cut(s)	174, 290
TscAI	CASTG	1 cut(s)	249
TspDTI	ATGAA	6 cut(s)	329, 399, 618, 653, 777, 782
TspRI	CASTG	1 cut(s)	249
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	2 cut(s)	268, 592
XmnI	GAANNNNTTC	2 cut(s)	336, 879
XspI	CTAG	2 cut(s)	63, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.