Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

7916622 .. 7922238

Gene Structure 5617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13021.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGTTCCGCAATTCGGTTTTTTGAGTTGAACACCGGCGCCAAGATGCCTTCTGTAGGCTTAGGCACTTATCGCTCCGATACTCATCTCGTCGGCGACGTCCTCACCTCTGCAGTTAAGATGGGATATCGCCATATTGACTGTGCCCAGATGTACGGCAATGAGAAGGAAATTGGTGATGCTTTGAAGAAGCTCTCTAATGATGGGATAGTGAAGCGTGAGGACTTATGGATCACTTCCAAACTCTGGTGTACTGATCATGAACCAGAAGATGTGCCAAAAGCATTTAATAAACCTTTGCAAGACTTGCAACTTGACTATCTGGATCTTTATCTTATCCACTGGCCGGTCAGCATAAAAAATGGAAAGCTTACTCAACCTAATATACCTGCTACTTGGAAAGCAATGGAGGCACTCTATGATTCAGGCAAGGCCAGGGCTATTGGAGTCAGCAATTTCTCTTCAAAGAAGCTCGGCGATCTGTTAGAGGTGGCACGGATACCTCCTGCTGTTAATCAAGTGGAGTTGCACCCTCAATGGCAGCAACTGAAGCTACATGCTTTCTGTCAATCTAAAGGAGTTCACTTAACTGCATATTCACCATTGGGAAAGAAGAAGGTCCTTGAGCATGCAATTGTGAAAATGGTGGCAGAAGAATTGGGCAAGACTCCTGCTCAAGTGGTTCTTCGATGGGGCTTGCAAATGGGTCACAGTCTAGTGCCTAAAAGCTCAAACCGGACAAGGATTGAGGATAATTTTGATCTTTTTGATTGGTCTATACCCGAACACATGCTTGCCAAGTTTTCTGAAATTAACCAGGAGAAGTTTGTTCAAGGTACTGGTTTTGTACATGAGACTCTCGGTGCATATAAGACCCTTGAAGAACTCTGGGATGAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

302

Amino Acids

33.97

Weight (kDa)

6.84

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	27 - 272	9e-51	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	246
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	239, 333
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	39, 99
AfaI	GTAC	4 cut(s)	155, 253, 838, 849
AfiI	CCNNNNNNNGG	4 cut(s)	15, 56, 246, 346
AgsI	TTSAA	5 cut(s)	31, 187, 465, 833, 881
AjnI	CCWGG	2 cut(s)	434, 816
AluBI	AGCT	5 cut(s)	193, 370, 472, 553, 729
AluI	AGCT	5 cut(s)	193, 370, 472, 553, 729
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	239, 333
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	2 cut(s)	344, 432
ApeKI	GCWGC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	3 cut(s)	97, 188, 591
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	3 cut(s)	115, 197, 684
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	436, 818
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	2 cut(s)	54, 111
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	436, 818
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	7, 40
BmrFI	CCNGG	2 cut(s)	436, 818
BmsI	GCATC	2 cut(s)	36, 169
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	644, 660
BsaBI	GATNNNNATC	2 cut(s)	84, 330
BsaHI	GRCGYC	2 cut(s)	39, 99
BsaJI	CCNNGG	1 cut(s)	435
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 56, 246, 346
Bse118I	RCCGGY	2 cut(s)	35, 346
Bse1I	ACTGG	2 cut(s)	347, 844
Bse3DI	GCAATG	2 cut(s)	166, 411
Bse8I	GATNNNNATC	2 cut(s)	84, 330
BseBI	CCWGG	2 cut(s)	436, 818
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	898
BseJI	GATNNNNATC	2 cut(s)	84, 330
BseLI	CCNNNNNNNGG	4 cut(s)	15, 56, 246, 346
BseMI	GCAATG	2 cut(s)	166, 411
BseNI	ACTGG	2 cut(s)	347, 844
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	553
BshFI	GGCC	2 cut(s)	346, 434
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	36, 347, 736
BslI	CCNNNNNNNGG	4 cut(s)	15, 56, 246, 346
BsmAI	GTCTC	1 cut(s)	848
BsnI	GGCC	2 cut(s)	346, 434
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	5 cut(s)	231, 256, 325, 478, 760
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	346, 434
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	7, 40
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	239, 333
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	166, 411
BsrFI	RCCGGY	2 cut(s)	35, 346
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	2 cut(s)	347, 844
BssAI	RCCGGY	2 cut(s)	35, 346
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	5 cut(s)	231, 256, 325, 478, 760
BssNI	GRCGYC	2 cut(s)	39, 99
Bst2UI	CCWGG	2 cut(s)	436, 818
Bst4CI	ACNGT	2 cut(s)	143, 713
Bst6I	CTCTTC	1 cut(s)	466
BstACI	GRCGYC	2 cut(s)	39, 99
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	847
BstC8I	GCNNGC	3 cut(s)	630, 698, 795
BstDEI	CTNAG	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	898
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	234, 259, 328, 481, 763
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	5 cut(s)	231, 256, 325, 478, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 307, 410, 550
BstNI	CCWGG	2 cut(s)	436, 818
BstNSI	RCATGY	3 cut(s)	560, 632, 793
BstSCI	CCNGG	2 cut(s)	434, 816
BstSFI	CTRYAG	2 cut(s)	54, 111
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	346, 434
BtsCI	GGATG	1 cut(s)	898
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	630, 698, 795
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	35, 346
Cfr13I	GGNCC	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	154, 252, 837, 848
CviAII	CATG	5 cut(s)	260, 557, 629, 790, 851
CviQI	GTAC	4 cut(s)	154, 252, 837, 848
DdeI	CTNAG	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	5 cut(s)	233, 258, 327, 480, 762
DpnII	GATC	5 cut(s)	231, 256, 325, 478, 760
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	434, 816
EcoRV	GATATC	1 cut(s)	128
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	5 cut(s)	263, 560, 632, 793, 854
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	5 cut(s)	259, 556, 628, 789, 850
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	542
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	346, 434
HapII	CCGG	3 cut(s)	36, 347, 736
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 99
Hin1II	CATG	5 cut(s)	263, 560, 632, 793, 854
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	4 cut(s)	422, 447, 667, 856
HpaII	CCGG	3 cut(s)	36, 347, 736
HphI	GGTGA	3 cut(s)	97, 188, 591
Hpy166II	GTNNAC	2 cut(s)	252, 583
Hpy188I	TCNGA	2 cut(s)	79, 808
Hpy188III	TCNNGA	2 cut(s)	260, 323
Hpy8I	GTNNAC	2 cut(s)	252, 583
Hpy99I	CGWCG	2 cut(s)	95, 101
HpyAV	CCTTC	3 cut(s)	60, 160, 610
HpyCH4III	ACNGT	2 cut(s)	143, 713
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	8 cut(s)	113, 301, 310, 529, 593, 632, 700, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 307, 410, 550
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	39, 99
Hsp92II	CATG	5 cut(s)	263, 560, 632, 793, 854
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	231, 256, 325, 478, 760
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	2 cut(s)	36, 169
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	5 cut(s)	233, 258, 327, 480, 762
MboI	GATC	5 cut(s)	231, 256, 325, 478, 760
MboII	GAAGA	7 cut(s)	199, 281, 453, 625, 665, 677, 893
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	7 cut(s)	12, 171, 454, 633, 656, 754, 810
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	456, 661, 850
MnlI	CCTC	8 cut(s)	113, 118, 214, 403, 481, 513, 543, 742
MseI	TTAA	5 cut(s)	117, 288, 513, 587, 813
MspI	CCGG	3 cut(s)	36, 347, 736
MspR9I	CCNGG	2 cut(s)	436, 818
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	436, 818
MwoI	GCNNNNNNNGC	4 cut(s)	72, 307, 410, 550
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	5 cut(s)	231, 256, 325, 478, 760
NlaIII	CATG	5 cut(s)	263, 560, 632, 793, 854
NlaIV	GGNNCC	2 cut(s)	7, 40
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	707
NspI	RCATGY	3 cut(s)	560, 632, 793
PaeI	GCATGC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	3 cut(s)	455, 661, 850
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	455, 661, 850
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	434, 816
PspGI	CCWGG	2 cut(s)	434, 816
PspN4I	GGNNCC	2 cut(s)	7, 40
PspPI	GGNCC	1 cut(s)	619
PspPPI	RGGWCCY	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	4 cut(s)	155, 253, 838, 849
RsaNI	GTAC	4 cut(s)	154, 252, 837, 848
SaqAI	TTAA	5 cut(s)	117, 288, 513, 587, 813
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	5 cut(s)	231, 256, 325, 478, 760
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	3 cut(s)	456, 661, 850
ScrFI	CCNGG	2 cut(s)	436, 818
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	36, 169
SfcI	CTRYAG	2 cut(s)	54, 111
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	623, 675
SmoI	CTYRAG	2 cut(s)	623, 675
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	7 cut(s)	12, 171, 454, 633, 656, 754, 810
SsiI	CCGC	1 cut(s)	9
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	434, 816
TaaI	ACNGT	2 cut(s)	143, 713
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	688
TasI	AATT	7 cut(s)	12, 171, 454, 633, 656, 754, 810
TatI	WGTACW	2 cut(s)	251, 847
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	5 cut(s)	117, 288, 513, 587, 813
Tru9I	TTAA	5 cut(s)	117, 288, 513, 587, 813
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	619
XagI	CCTNNNNNAGG	1 cut(s)	54
XceI	RCATGY	3 cut(s)	560, 632, 793
XspI	CTAG	1 cut(s)	716
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.