Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361281.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 795

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361281.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ggatatgcaccattgggaaggcaaaaggtgcttgaacattctattgtgaatatggtggcagaaaaattgggcaagactcctgcacaagtagttcttcggtgggggatgcaaatgggtcacagtgtagtgcctaaaagcacaaatcagatgaggattcaggaaaattttaatatttttgattggtctatacctgataacttgtttgccaagttttctgaaattgagcaggagaggctgcttaaaggtactgcattcgtccacaagactcacggtttttacaagaccattgaggaactctgggatggagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

103

Amino Acids

11.87

Weight (kDa)

7.11

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	296
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
BmsI	GCATC	1 cut(s)	96
BseGI	GGATG	2 cut(s)	111, 307
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	122, 272
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	111, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 232
BstV1I	GCAGC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	111, 307
BtsIMutI	CAGTG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	246
CviJI	RGCY	1 cut(s)	235
CviKI_1	RGCY	1 cut(s)	235
CviQI	GTAC	1 cut(s)	246
FaiI	YATR	3 cut(s)	6, 53, 188
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HinfI	GANTC	3 cut(s)	76, 154, 265
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	147, 217
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	2 cut(s)	122, 272
HpyCH4V	TGCA	4 cut(s)	8, 83, 109, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 232
LpnPI	CCDG	5 cut(s)	93, 143, 204, 212, 283
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	3 cut(s)	65, 163, 219
MlyI	GAGTC	2 cut(s)	70, 259
MnlI	CCTC	3 cut(s)	144, 225, 283
MseI	TTAA	2 cut(s)	168, 240
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	28, 232
NmuCI	GTSAC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	70, 259
PpsI	GAGTC	2 cut(s)	70, 259
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	168, 240
SatI	GCNGC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	70, 259
SetI	ASST	3 cut(s)	30, 193, 247
SfaNI	GCATC	1 cut(s)	96
Sse9I	AATT	3 cut(s)	65, 163, 219
SspI	AATATT	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	122, 272
TasI	AATT	3 cut(s)	65, 163, 219
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	168, 240
Tru9I	TTAA	2 cut(s)	168, 240
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	116
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.