Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

11892897 .. 11895179

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCGAACCCAAGTCACTTTTTTGTGCTGAACACAGGCGCCAAGATACCTTCGGTCGGCTTAGGAACATTCCGGACGGAACCTGATCTCACTGTCGACCTCTTCACCACTGCCATTAAGGTTGGGTATCGTCATATTGATTGTGCTCAAGTGTATGGCAACGAGAAGGAGATTGGTGATGCTCTGAAGAAGCTGTGTGATGAGGGGATGGTGAAGCGCGAGGATTTATGGATCACTTCCAAACTCTGGTGTGCTGATCACGAACCAGAAGATGTGCCAAAAGCATTTAATAAGACTTTGCAAGACTTGCAACTTGACTATCTGGATCTTTACCTTATCCATTGGCCAGTCAGCATGAAAAATGGAAAGCTTACTCAACCTAATATACCTGCCACTTGGAAAGCAATGGAGGCACTCTATGATTCAGGCAAGGCAAGGGCTATTGGAGTCAGCAATTTCTCTTCAAAGAAGCTCGGGGATCTCTTAGAGGTGGCACGGATACCTCCTGCTGTTAATCAAGTGGAGTTGCACCCTCAGTGGCAGCAACCTAAGCTACATGCTTTCTGTCAATCTAAGGGAGTTCACTTAACTGCATATTCGCCATTGGTAAAGAACAAGATCCTTGAGCATTCTATTGTGAAAATGGTGGCAGAAGAATTGGGAAAGACTCCTGCTCAAGTTGTTCTTCGGTGGGGCTTGCAAATGGGTCACAGTCTAGTGCCTAAAAGCTCAAATAAGACCAGGATTCAGGAAAATTTTGATCTTTTTGATTGGTCTATACCTGAACACTTGCTTGCCAAGTTTTCTGAAATTAAGCAGGAGAAGCTTATTCAAGCTACTCATTTTGTGCATGAGACTCTTGGTCCATATAAGACCCTTGAAGAACTCTGGGATGAACAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

301

Amino Acids

34.16

Weight (kDa)

6.46

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	21 - 270	1.4e-50	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	72
AclWI	GGATC	4 cut(s)	239, 333, 486, 613
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AgsI	TTSAA	3 cut(s)	465, 833, 881
AhdI	GACNNNNNGTC	1 cut(s)	861
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	7 cut(s)	193, 370, 472, 553, 729, 826, 836
AluI	AGCT	7 cut(s)	193, 370, 472, 553, 729, 826, 836
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	4 cut(s)	239, 333, 486, 613
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	754
AspLEI	GCGC	2 cut(s)	41, 219
AspS9I	GGNCC	1 cut(s)	863
AsuHPI	GGTGA	3 cut(s)	97, 188, 223
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	742
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	863
BmeRI	GACNNNNNGTC	1 cut(s)	861
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	40, 81
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	2 cut(s)	61, 549
BpuEI	CTTGAG	3 cut(s)	132, 644, 660
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	742
BseGI	GGATG	2 cut(s)	213, 898
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 81
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	4 cut(s)	239, 333, 486, 613
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	94, 713, 900
Bst6I	CTCTTC	2 cut(s)	107, 466
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	698, 795
BstDEI	CTNAG	5 cut(s)	61, 484, 534, 549, 573
BstF5I	GGATG	2 cut(s)	213, 898
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 219
BstKTI	GATC	7 cut(s)	88, 234, 259, 328, 481, 621, 763
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	740
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	3 cut(s)	325, 478, 618
BstYI	RGATCY	3 cut(s)	325, 478, 618
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	213, 898
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	90, 108, 542
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	698, 795
CfoI	GCGC	2 cut(s)	41, 219
Cfr13I	GGNCC	1 cut(s)	863
CviAII	CATG	3 cut(s)	355, 557, 851
DdeI	CTNAG	5 cut(s)	61, 484, 534, 549, 573
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	87, 233, 258, 327, 480, 620, 762
DpnII	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
DriI	GACNNNNNGTC	1 cut(s)	861
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	107, 466
Eam1105I	GACNNNNNGTC	1 cut(s)	861
EarI	CTCTTC	2 cut(s)	107, 466
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	740
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	358, 560, 854
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	3 cut(s)	354, 556, 850
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	40, 218
GluI	GCNGC	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	2 cut(s)	41, 219
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	358, 560, 854
Hin6I	GCGC	2 cut(s)	39, 217
HinP1I	GCGC	2 cut(s)	39, 217
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	368, 824
HinfI	GANTC	5 cut(s)	422, 447, 667, 745, 856
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	97, 188, 223
Hpy166II	GTNNAC	2 cut(s)	97, 583
Hpy188I	TCNGA	2 cut(s)	186, 808
Hpy188III	TCNNGA	4 cut(s)	73, 260, 323, 749
Hpy8I	GTNNAC	2 cut(s)	97, 583
HpyAV	CCTTC	2 cut(s)	60, 160
HpyCH4III	ACNGT	3 cut(s)	94, 713, 900
HpyCH4V	TGCA	6 cut(s)	301, 310, 529, 593, 700, 850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
HpyF3I	CTNAG	5 cut(s)	61, 484, 534, 549, 573
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	358, 560, 854
HspAI	GCGC	2 cut(s)	39, 217
KasI	GGCGCC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	716
MaeIII	GTNAC	2 cut(s)	14, 707
MalI	GATC	7 cut(s)	87, 233, 258, 327, 480, 620, 762
MboI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
MboII	GAAGA	7 cut(s)	94, 199, 281, 453, 665, 677, 893
MflI	RGATCY	3 cut(s)	325, 478, 618
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	4 cut(s)	454, 656, 754, 810
MluNI	TGGCCA	1 cut(s)	346
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	456, 661, 850
MnlI	CCTC	7 cut(s)	110, 196, 214, 403, 481, 513, 543
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	5 cut(s)	117, 288, 513, 587, 813
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
NlaIII	CATG	3 cut(s)	358, 560, 854
NlaIV	GGNNCC	2 cut(s)	40, 81
NmuCI	GTSAC	2 cut(s)	14, 707
NspI	RCATGY	1 cut(s)	560
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	422, 745
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	3 cut(s)	455, 661, 850
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	455, 661, 850
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	40, 81
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	325, 478, 618
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	117, 288, 513, 587, 813
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	3 cut(s)	456, 661, 850
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	863
SmlI	CTYRAG	3 cut(s)	147, 623, 675
SmoI	CTYRAG	3 cut(s)	147, 623, 675
Sse9I	AATT	4 cut(s)	454, 656, 754, 810
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	94, 713, 900
TaqI	TCGA	2 cut(s)	5, 96
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	4 cut(s)	454, 656, 754, 810
TfiI	GAWTC	2 cut(s)	422, 745
Tru1I	TTAA	5 cut(s)	117, 288, 513, 587, 813
Tru9I	TTAA	5 cut(s)	117, 288, 513, 587, 813
TscAI	CASTG	3 cut(s)	97, 115, 542
TseFI	GTSAC	2 cut(s)	14, 707
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	14, 707
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	92, 511
TspRI	CASTG	3 cut(s)	97, 115, 542
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.