FvH4_6g13030

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002704
Physical Location & Seq
Reverse (-)
7922414 .. 7924848
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13030.t1

Sequence Viewer

Length: 948 bp
ATGGCGAAAGCAATTCGATTCTTTGAGCTGAACACCGGAGCCAAGATTCCGGCCGTCGGTTTGGGGACGTGGCAGGCCGAGCCCGGCGTCGTTGGCGATGCCGTCACCGCCGCCATCAAGGTTGGGTATAGGCATATTGATTGTGCTCAAATTTATGGCAACGAAAAAGAGATTGGTTGTGCTCTTAAGAAGCTTTATGATGATGGTGTTGTGAAGCGTGAGGATTTGTGGATTACTTCGAAACTATGGTGTAGTAAACATGCACCAGAAGATGTGCCAAAGGCACTAGATAGCACTCTGCAGGACTTGCAAACCGATTATCTCGATCTGTATCTGATTCACTGGCCAGTTAGCATGAAAAAGGGCTCAGTTGGCTTTAAGCCTGAGAACCTCTCCCAACCTGACCTACCAAGTACTTGGAAAGTAATGGAAGCACTGTACGATTCTGGCAAGGCCAAGGCTATAGGAGTTAGCAATTTTTCTACTAAAAAGCTTGGAGATCTACTATCCGTGGCACGCATACCTCCTGCTGTTAACCAAGTGGAATTGCACCCCCAATGGCAGCAGCCAAAGCTAAAAGAATTGTGCAAATCTAAAGGAGTCCACTTAACTGGATATTCACCTTTGGGATCACCAGGTACAAGTCATATGAAGGGAGATGTTCTTAAGAATCCAGTTCTGGCATTGGTAGCAGAGAAGCTGGGCAAGACTCCTGCACAAGTGGCTCTCCGTTGGGGGCTACAATCAGGTCATAGTGTGCTGCCTAAGAGCACAAAGGAGGCCAGGATCAAAGAGAATTTTGATGTTTATGATTGGTCCATACCCGAGGACTTGATTTCAAAGTTTTCTGATCTAAAGCAGGAGAGGCTGCTTAAAGGCACTGGATTTGTCAATGAGACTCACGGTTTCTACAAGAACATTGAGGAGCTTTGGGATGGAGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

316

Amino Acids

34.88

Weight (kDa)

8.17

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 282 3.6e-52 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 111
AclWI GGATC 2 cut(s) 637, 794
AcoI YGGCCR 2 cut(s) 51, 344
AcsI RAATTY 2 cut(s) 150, 796
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 415, 440, 640
AfiI CCNNNNNNNGG 1 cut(s) 56
AflII CTTAAG 2 cut(s) 185, 665
AgsI TTSAA 1 cut(s) 840
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 2 cut(s) 634, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 6 cut(s) 28, 193, 493, 574, 700, 928
AluI AGCT 6 cut(s) 28, 193, 493, 574, 700, 928
Alw21I GWGCWC 3 cut(s) 148, 184, 773
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 2 cut(s) 637, 794
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 5 cut(s) 51, 75, 344, 453, 780
ApeKI GCWGC 4 cut(s) 562, 565, 760, 868
ApoI RAATTY 2 cut(s) 150, 796
AspS9I GGNCC 1 cut(s) 816
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 97, 612, 624
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 1 cut(s) 816
BalI TGGCCA 1 cut(s) 346
BanII GRGCYC 2 cut(s) 84, 368
Bbv12I GWGCWC 3 cut(s) 148, 184, 773
BbvI GCAGC 4 cut(s) 574, 577, 747, 855
BccI CCATC 3 cut(s) 122, 197, 929
BceAI ACGGC 2 cut(s) 38, 86
BciT130I CCWGG 2 cut(s) 636, 784
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 299, 462
BfrI CTTAAG 2 cut(s) 185, 665
BglII AGATCT 1 cut(s) 499
BisI GCNGC 5 cut(s) 111, 563, 566, 761, 869
BlsI GCNGC 5 cut(s) 112, 564, 567, 762, 870
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 84, 636, 784
Bme18I GGWCC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 824
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 3 cut(s) 84, 636, 784
BmsI GCATC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 377, 409
Bpu14I TTCGAA 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 456, 510, 825
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 5 cut(s) 347, 347, 616, 674, 886
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 2 cut(s) 636, 784
BseDI CCNNGG 3 cut(s) 456, 510, 825
BseGI GGATG 1 cut(s) 940
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 375, 381
BseNI ACTGG 5 cut(s) 347, 347, 616, 674, 886
BseRI GAGGAG 1 cut(s) 938
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 574, 577, 747, 855
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 699
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 5 cut(s) 53, 77, 346, 455, 782
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 3 cut(s) 148, 184, 773
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 3 cut(s) 36, 50, 84
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 5 cut(s) 53, 77, 346, 455, 782
BsoBI CYCGRG 1 cut(s) 824
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 5 cut(s) 84, 148, 184, 368, 773
Bsp143I GATC 5 cut(s) 325, 499, 629, 786, 850
BspACI CCGC 2 cut(s) 108, 111
BspANI GGCC 5 cut(s) 53, 77, 346, 455, 782
BspCNI CTCAG 2 cut(s) 376, 380
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 637, 794
BspT104I TTCGAA 1 cut(s) 239
BspTI CTTAAG 2 cut(s) 185, 665
BsrI ACTGG 5 cut(s) 347, 347, 616, 674, 886
BssECI CCNNGG 3 cut(s) 456, 510, 825
BssMI GATC 5 cut(s) 325, 499, 629, 786, 850
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 636, 784
Bst4CI ACNGT 2 cut(s) 438, 905
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 2 cut(s) 185, 665
BstAPI GCANNNNNTGC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 75, 517
BstDEI CTNAG 3 cut(s) 367, 384, 765
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 940
BstKTI GATC 5 cut(s) 328, 502, 632, 789, 853
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 5 cut(s) 325, 499, 629, 786, 850
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 9 cut(s) 79, 93, 107, 307, 372, 571, 689, 722, 865
BstNI CCWGG 2 cut(s) 636, 784
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 82, 634, 782
BstSFI CTRYAG 2 cut(s) 299, 462
BstV1I GCAGC 4 cut(s) 574, 577, 747, 855
BstX2I RGATCY 1 cut(s) 499
BstXI CCANNNNNNTGG 2 cut(s) 417, 611
BstYI RGATCY 1 cut(s) 499
BstZI CGGCCG 1 cut(s) 51
BsuRI GGCC 5 cut(s) 53, 77, 346, 455, 782
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 940
BtsIMutI CAGTG 3 cut(s) 340, 434, 879
Cac8I GCNNGC 2 cut(s) 75, 517
Cfr13I GGNCC 1 cut(s) 816
CseI GACGC 1 cut(s) 76
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 3 cut(s) 414, 439, 639
CviAII CATG 2 cut(s) 260, 355
CviQI GTAC 3 cut(s) 414, 439, 639
DdeI CTNAG 3 cut(s) 367, 384, 765
DpnI GATC 5 cut(s) 327, 501, 631, 788, 852
DpnII GATC 5 cut(s) 325, 499, 629, 786, 850
EaeI YGGCCR 2 cut(s) 51, 344
EagI CGGCCG 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 84, 368
Eco47I GGWCC 1 cut(s) 816
Eco52I CGGCCG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 634, 782
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 84, 368
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 2 cut(s) 263, 358
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 259, 354
FauNDI CATATG 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 111, 563, 566, 761, 869
FriOI GRGCYC 2 cut(s) 84, 368
Fsp4HI GCNGC 5 cut(s) 111, 563, 566, 761, 869
FspBI CTAG 1 cut(s) 287
GluI GCNGC 5 cut(s) 111, 563, 566, 761, 869
GsaI CCCAGC 1 cut(s) 704
HaeIII GGCC 5 cut(s) 53, 77, 346, 455, 782
HapII CCGG 3 cut(s) 36, 50, 84
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 263, 358
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 2 cut(s) 191, 491
HinfI GANTC 8 cut(s) 18, 46, 337, 443, 600, 670, 709, 898
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 3 cut(s) 36, 50, 84
HphI GGTGA 3 cut(s) 97, 612, 624
Hpy166II GTNNAC 3 cut(s) 257, 535, 604
Hpy188I TCNGA 2 cut(s) 336, 850
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 3 cut(s) 257, 535, 604
Hpy99I CGWCG 2 cut(s) 59, 92
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 2 cut(s) 438, 905
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 263, 301, 310, 550, 588, 716
HpyF10VI GCNNNNNNNGC 9 cut(s) 79, 93, 107, 307, 372, 571, 689, 722, 865
HpyF3I CTNAG 3 cut(s) 367, 384, 765
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 263, 358
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 5 cut(s) 325, 499, 629, 786, 850
LmnI GCTCC 2 cut(s) 38, 925
Lsp1109I GCAGC 4 cut(s) 574, 577, 747, 855
LweI GCATC 1 cut(s) 88
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 327, 501, 631, 788, 852
MboI GATC 5 cut(s) 325, 499, 629, 786, 850
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 5 cut(s) 84, 148, 184, 368, 773
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 6 cut(s) 12, 150, 475, 545, 581, 796
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 3 cut(s) 609, 703, 892
MnlI CCTC 7 cut(s) 214, 401, 534, 772, 820, 858, 916
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 6 cut(s) 186, 378, 534, 608, 666, 873
Msp20I TGGCCA 1 cut(s) 346
MspCI CTTAAG 2 cut(s) 185, 665
MspI CCGG 3 cut(s) 36, 50, 84
MspR9I CCNGG 3 cut(s) 84, 636, 784
MvaI CCWGG 2 cut(s) 636, 784
MwoI GCNNNNNNNGC 9 cut(s) 79, 93, 107, 307, 372, 571, 689, 722, 865
NciI CCSGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 648
NdeII GATC 5 cut(s) 325, 499, 629, 786, 850
NlaIII CATG 2 cut(s) 263, 358
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 263
NspV TTCGAA 1 cut(s) 239
PfeI GAWTC 5 cut(s) 18, 46, 337, 443, 670
PkrI GCNGC 5 cut(s) 112, 564, 567, 762, 870
PleI GAGTC 3 cut(s) 608, 703, 892
PpsI GAGTC 3 cut(s) 608, 703, 892
Psp6I CCWGG 2 cut(s) 634, 782
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 634, 782
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 816
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 3 cut(s) 415, 440, 640
RsaNI GTAC 3 cut(s) 414, 439, 639
SaqAI TTAA 6 cut(s) 186, 378, 534, 608, 666, 873
SatI GCNGC 5 cut(s) 111, 563, 566, 761, 869
Sau3AI GATC 5 cut(s) 325, 499, 629, 786, 850
Sau96I GGNCC 1 cut(s) 816
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 3 cut(s) 609, 703, 892
ScrFI CCNGG 3 cut(s) 84, 636, 784
SduI GDGCHC 5 cut(s) 84, 148, 184, 368, 773
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 299, 462
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 185, 665
SmoI CTYRAG 2 cut(s) 185, 665
Sse9I AATT 6 cut(s) 12, 150, 475, 545, 581, 796
SsiI CCGC 2 cut(s) 108, 111
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 82, 634, 782
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 438, 905
TaiI ACGT 1 cut(s) 71
TaqI TCGA 3 cut(s) 16, 239, 324
TasI AATT 6 cut(s) 12, 150, 475, 545, 581, 796
TatI WGTACW 1 cut(s) 413
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 5 cut(s) 18, 46, 337, 443, 670
Tru1I TTAA 6 cut(s) 186, 378, 534, 608, 666, 873
Tru9I TTAA 6 cut(s) 186, 378, 534, 608, 666, 873
TscAI CASTG 3 cut(s) 347, 441, 886
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 4 cut(s) 562, 565, 760, 868
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 371, 665
TspGWI ACGGA 2 cut(s) 499, 719
TspRI CASTG 3 cut(s) 347, 441, 886
Vha464I CTTAAG 2 cut(s) 185, 665
VpaK11BI GGWCC 1 cut(s) 816
XapI RAATTY 2 cut(s) 150, 796
XceI RCATGY 1 cut(s) 263
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.