Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029050.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1126

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029050.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

atggcgaacccaattcgtttttttgtgctgaacacaggcgccaagatgccttcggtcggcttaggaacattccgcaccgaacctcatctcaccgtcgacctcttcaccactgccattaaggttgggtatcgtcatattgattgtgctcaaatgtatggcaacgagaaggagattggtgatgctctgaagaagctgtgtgatgatgggatggtgaagcgtgaggatttatggatcacttccaaactctggtgtactgatcatgaaccagaagatgtaccaaaagcatttaataaaacattgcaagacttgcaacttgactatctggatctttatcttatccattggccagtcagcataaaaaatggaaagctcactcaacctaatatacctgctacttggaaagcaatggaagcactctatgattcaggcaaggccagggctattggagtcagcaatttctcttcaaagaagctcggggatctcttagaggtggcacggatacctcctgctgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

6.9

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	239, 333, 486
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	253, 276
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AgsI	TTSAA	1 cut(s)	465
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	193, 370, 472
AluI	AGCT	3 cut(s)	193, 370, 472
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	3 cut(s)	239, 333, 486
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	344, 432
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	82, 97, 188, 223
AvaI	CYCGRG	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	2 cut(s)	197, 202
BciT130I	CCWGG	1 cut(s)	436
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	36, 169
Bpu10I	CCTNAGC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	296, 411
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	2 cut(s)	296, 411
BseNI	ACTGG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	346, 434
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsnI	GGCC	2 cut(s)	346, 434
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	231, 256, 325, 478
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	346, 434
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	239, 333, 486
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	296, 411
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	231, 256, 325, 478
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	107, 466
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	61, 484
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	234, 259, 328, 481
BstMBI	GATC	4 cut(s)	231, 256, 325, 478
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 410
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	325, 478
BstYI	RGATCY	2 cut(s)	325, 478
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	346, 434
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	397
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	252, 275
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	60, 193, 346, 370, 434, 440, 472
CviKI_1	RGCY	7 cut(s)	60, 193, 346, 370, 434, 440, 472
CviQI	GTAC	2 cut(s)	252, 275
DdeI	CTNAG	2 cut(s)	61, 484
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	4 cut(s)	233, 258, 327, 480
DpnII	GATC	4 cut(s)	231, 256, 325, 478
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	107, 466
EarI	CTCTTC	2 cut(s)	107, 466
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	135, 156, 229, 261, 356, 386, 420
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	1 cut(s)	220
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	346, 434
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	422, 447
HphI	GGTGA	4 cut(s)	82, 97, 188, 223
Hpy166II	GTNNAC	2 cut(s)	97, 252
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	2 cut(s)	260, 323
Hpy8I	GTNNAC	2 cut(s)	97, 252
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	60, 160
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	301, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 410
HpyF3I	CTNAG	2 cut(s)	61, 484
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	231, 256, 325, 478
LpnPI	CCDG	9 cut(s)	21, 232, 279, 308, 360, 402, 411, 421, 448
LweI	GCATC	2 cut(s)	36, 169
MalI	GATC	4 cut(s)	233, 258, 327, 480
MboI	GATC	4 cut(s)	231, 256, 325, 478
MboII	GAAGA	4 cut(s)	94, 199, 281, 453
MflI	RGATCY	2 cut(s)	325, 478
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	2 cut(s)	12, 454
MluNI	TGGCCA	1 cut(s)	346
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	5 cut(s)	93, 110, 214, 481, 513
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	3 cut(s)	117, 288, 513
Msp20I	TGGCCA	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	307, 410
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	4 cut(s)	231, 256, 325, 478
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	455
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	325, 478
RsaI	GTAC	2 cut(s)	253, 276
RsaNI	GTAC	2 cut(s)	252, 275
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	117, 288, 513
Sau3AI	GATC	4 cut(s)	231, 256, 325, 478
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	36, 169
SfoI	GGCGCC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	12, 454
SsiI	CCGC	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	12, 454
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	117, 288, 513
Tru9I	TTAA	3 cut(s)	117, 288, 513
TscAI	CASTG	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.