Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005190.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

18822 .. 19627

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005190.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggcgaacgcaattcggttttttgagttgaacaccggcgccaagatgccttctttaggcttaggcacttatcgctccgatactcatctcgtgggcgacgtcctcacctctgcaattaagattggatatcgtcatgttgactgtgcccaaatgtatggcaatgagaaggagattggtgatgctttgaagaagctatgtaatgatgggatagtgaagcgtgaggaattatgggtcacttccaaactctggtgtactgatcatgaaccagaagatgtaccgaaggcatttgataaaactttgcaagatttgcaacttgactatctggatctttatcttatggaaatgagtaatcacattctgcacagtgatttgagacatgtgcttgagtctcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

131

Amino Acids

14.98

Weight (kDa)

5.39

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	246
AclWI	GGATC	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	39, 99
AfaI	GTAC	2 cut(s)	253, 276
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	31, 187
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	97, 188
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	89
BccI	CCATC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	36, 169
Bpu10I	CCTNAGC	1 cut(s)	61
BsaBI	GATNNNNATC	2 cut(s)	84, 330
BsaHI	GRCGYC	2 cut(s)	39, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse118I	RCCGGY	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	2 cut(s)	84, 330
BseJI	GATNNNNATC	2 cut(s)	84, 330
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	256, 325
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	2 cut(s)	256, 325
BssNI	GRCGYC	2 cut(s)	39, 99
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	143, 365
BstACI	GRCGYC	2 cut(s)	39, 99
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	61
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	259, 328
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	256, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 307
BstNSI	RCATGY	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	252, 275
CviAII	CATG	3 cut(s)	134, 260, 377
CviJI	RGCY	2 cut(s)	60, 193
CviKI_1	RGCY	2 cut(s)	60, 193
CviQI	GTAC	2 cut(s)	252, 275
DdeI	CTNAG	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	258, 327
DpnII	GATC	2 cut(s)	256, 325
Eco32I	GATATC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	128
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	137, 263, 380
FaiI	YATR	7 cut(s)	135, 156, 196, 229, 261, 338, 378
FatI	CATG	3 cut(s)	133, 259, 376
FbaI	TGATCA	1 cut(s)	256
FspBI	CTAG	1 cut(s)	394
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 99
Hin1II	CATG	3 cut(s)	137, 263, 380
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	97, 188
Hpy166II	GTNNAC	2 cut(s)	139, 252
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	260, 323
Hpy8I	GTNNAC	2 cut(s)	139, 252
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	60, 160, 274
HpyCH4III	ACNGT	2 cut(s)	143, 365
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	113, 301, 310, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 307
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	39, 99
Hsp92II	CATG	3 cut(s)	137, 263, 380
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 325
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	49, 232, 279, 308
LweI	GCATC	2 cut(s)	36, 169
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	258, 327
MboI	GATC	2 cut(s)	256, 325
MboII	GAAGA	2 cut(s)	199, 281
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	12, 114, 224
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	3 cut(s)	113, 118, 214
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	72, 307
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	2 cut(s)	256, 325
NlaIII	CATG	3 cut(s)	137, 263, 380
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	380
PagI	TCATGA	1 cut(s)	259
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	394
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	253, 276
RsaNI	GTAC	2 cut(s)	252, 275
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	256, 325
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	3 cut(s)	102, 110, 195
SfaNI	GCATC	2 cut(s)	36, 169
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	12, 114, 224
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	143, 365
TaiI	ACGT	1 cut(s)	102
TasI	AATT	3 cut(s)	12, 114, 224
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	54
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	394
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.