Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029051.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 877

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

gcgccaagatgccttcggtcggcttaggaacattccgcaccgaacctcatctcaccgtcgacctcttcaccactgccattaaggttgggtatcgtcatattgattgtgctcaaatgtatggcaacgagaaggagattggtgatgctctgaagaagctgtgtgatgatgggatggtgaagcgtgaggatttatggatcacttccaaactctggtgtactgatcatgaaccagaagatgtaccaaaagcatttaataaaactttgcaagacttgcaacttgactatctggatctttatctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

5.03

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	202, 296
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	216, 239
AfiI	CCNNNNNNNGG	2 cut(s)	19, 209
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	202, 296
AspLEI	GCGC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	45, 60, 151, 186
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	160, 165
BclI	TGATCA	1 cut(s)	219
BmsI	GCATC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 209
Bse8I	GATNNNNATC	1 cut(s)	293
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	19, 209
Bsh1285I	CGRYCG	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	19, 209
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	194, 219, 288
BspACI	CCGC	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	2 cut(s)	202, 296
BssMI	GATC	3 cut(s)	194, 219, 288
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	4
BstKTI	GATC	3 cut(s)	197, 222, 291
BstMBI	GATC	3 cut(s)	194, 219, 288
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	215, 238
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	2 cut(s)	23, 156
CviKI_1	RGCY	2 cut(s)	23, 156
CviQI	GTAC	2 cut(s)	215, 238
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	3 cut(s)	196, 221, 290
DpnII	GATC	3 cut(s)	194, 219, 288
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	169
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	98, 119, 192, 224
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	59
FokI	GGATG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	4
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	2
HinP1I	GCGC	1 cut(s)	2
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HphI	GGTGA	4 cut(s)	45, 60, 151, 186
Hpy166II	GTNNAC	2 cut(s)	60, 215
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	223, 286
Hpy8I	GTNNAC	2 cut(s)	60, 215
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	23, 123
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	264, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	2
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	194, 219, 288
LpnPI	CCDG	3 cut(s)	195, 242, 271
LweI	GCATC	1 cut(s)	132
MalI	GATC	3 cut(s)	196, 221, 290
MboI	GATC	3 cut(s)	194, 219, 288
MboII	GAAGA	3 cut(s)	57, 162, 244
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	56, 73, 177
MseI	TTAA	2 cut(s)	80, 251
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	3 cut(s)	194, 219, 288
NlaIII	CATG	1 cut(s)	226
PagI	TCATGA	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	2 cut(s)	216, 239
RsaNI	GTAC	2 cut(s)	215, 238
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	80, 251
Sau3AI	GATC	3 cut(s)	194, 219, 288
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	48, 65, 86, 158
SfaNI	GCATC	1 cut(s)	132
SgeI	CNNG	9 cut(s)	18, 138, 193, 222, 235, 241, 277, 282, 289
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	6
TatI	WGTACW	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	80, 251
Tru9I	TTAA	2 cut(s)	80, 251
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.