Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

12115909 .. 12117967

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGAACCCAATTCGTTTTTTTGTGCTGAACACAGGCGCCAAGATGCCTTCGGTCGGCTTAGGAACATTCCGCACCGAACCTCATCTCACCGTCGACCTCTTCACCACTGCCATTAAGATTGGTGATGCTCTGAAGAAGCTGTGTGATGATGGGATGGTGAAGCGTGAGGATTTATGGATCACTTCCAAACTCTGGTGTACTGATCATGAACCAGAAGATGTACCAAAAGCATTTAATAAAACTTTGCAAGACTTGCAACTTGACTATCTGGATCTTTATCTTATCCATTGGCCAGTCAGCATAAAAAATGGAAAGCTCACTCAACCTAATATACCTGCTACTTGGAAAGCAATGGAAGCACTCTATGATTCAGGCAAGGCCAGGGCTATTGGAGTCAGCAATTTCTCTTCAAAGAAGCTCGGGGATCTCTTAGAGGTGGCACGGATACCTCCTGCTGTTAATCAAGTGGAGTTGCACCCTCAGTGGCAGCAACCTAAGCTACATGCTTTCTGTCAATCTAAGGGAGTTCACTTAACTGCATATTCACCAATGGGAAAGAAAAAGGTCCTTGAGCATTCTATTGTGAAAATGGTGGCAGAAGAATTGGGAAAGACTCCTGCTCAAGTAGTTCTTCGGTGGGGGTTGCAAATGGGTCACAGTCTAGTGCCTAAAAGCTCAAATCAGACCAGGATTCAGGAAAATTTTGATCTTTTTGATTGGTCTATACCCGAACACTTGCTTGCCAAGTTTTCTGAAATTAAGCAGGAGAAGCTTATTCAAGGTACTGGTTTTGTGCATGAGACTCTTGGTGCATATAAGACCCTGGAAGAACTCTGGGATGAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

284

Amino Acids

32.12

Weight (kDa)

7.74

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	41 - 253	3.8e-40	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	188, 282, 435
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	202, 225, 787
AfiI	CCNNNNNNNGG	2 cut(s)	56, 195
AgsI	TTSAA	2 cut(s)	414, 782
AjnI	CCWGG	3 cut(s)	383, 689, 825
AluBI	AGCT	6 cut(s)	142, 319, 421, 502, 678, 775
AluI	AGCT	6 cut(s)	142, 319, 421, 502, 678, 775
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	3 cut(s)	188, 282, 435
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	293, 381
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	5 cut(s)	82, 97, 137, 172, 540
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	146, 151
BciT130I	CCWGG	3 cut(s)	385, 691, 827
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	1 cut(s)	665
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	385, 691, 827
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	3 cut(s)	385, 691, 827
BmsI	GCATC	2 cut(s)	36, 118
Bpu10I	CCTNAGC	2 cut(s)	61, 498
BpuEI	CTTGAG	2 cut(s)	593, 609
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	384, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 195
Bse1I	ACTGG	2 cut(s)	296, 793
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	385, 691, 827
BseDI	CCNNGG	2 cut(s)	384, 825
BseGI	GGATG	2 cut(s)	162, 847
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	56, 195
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	296, 793
BseXI	GCAGC	1 cut(s)	502
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	295, 383
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	56, 195
BsmAI	GTCTC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	295, 383
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	180, 205, 274, 427, 709
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	295, 383
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	3 cut(s)	188, 282, 435
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	296, 793
BssECI	CCNNGG	2 cut(s)	384, 825
BssMI	GATC	5 cut(s)	180, 205, 274, 427, 709
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	385, 691, 827
Bst4CI	ACNGT	2 cut(s)	94, 662
Bst6I	CTCTTC	2 cut(s)	107, 415
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	5 cut(s)	61, 433, 483, 498, 522
BstF5I	GGATG	2 cut(s)	162, 847
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	183, 208, 277, 430, 712
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	5 cut(s)	180, 205, 274, 427, 709
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 359, 499, 772
BstNI	CCWGG	3 cut(s)	385, 691, 827
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	383, 689, 825
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	274, 427
BstYI	RGATCY	2 cut(s)	274, 427
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	295, 383
BtsCI	GGATG	2 cut(s)	162, 847
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	108, 491
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	744
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	3 cut(s)	201, 224, 786
CviAII	CATG	3 cut(s)	209, 506, 800
CviQI	GTAC	3 cut(s)	201, 224, 786
DdeI	CTNAG	5 cut(s)	61, 433, 483, 498, 522
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	5 cut(s)	182, 207, 276, 429, 711
DpnII	GATC	5 cut(s)	180, 205, 274, 427, 709
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	107, 415
EarI	CTCTTC	2 cut(s)	107, 415
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	3 cut(s)	383, 689, 825
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	212, 509, 803
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	3 cut(s)	208, 505, 799
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	295, 383
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	212, 509, 803
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	5 cut(s)	371, 396, 616, 694, 805
HphI	GGTGA	5 cut(s)	82, 97, 137, 172, 540
Hpy166II	GTNNAC	3 cut(s)	97, 201, 532
Hpy188I	TCNGA	3 cut(s)	135, 687, 757
Hpy188III	TCNNGA	3 cut(s)	209, 272, 698
Hpy8I	GTNNAC	3 cut(s)	97, 201, 532
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	94, 662
HpyCH4V	TGCA	7 cut(s)	250, 259, 478, 542, 649, 799, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 359, 499, 772
HpyF3I	CTNAG	5 cut(s)	61, 433, 483, 498, 522
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	212, 509, 803
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	180, 205, 274, 427, 709
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	36, 118
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	1 cut(s)	656
MalI	GATC	5 cut(s)	182, 207, 276, 429, 711
MboI	GATC	5 cut(s)	180, 205, 274, 427, 709
MboII	GAAGA	7 cut(s)	94, 148, 230, 402, 614, 626, 842
MflI	RGATCY	2 cut(s)	274, 427
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	5 cut(s)	12, 403, 605, 703, 759
MluNI	TGGCCA	1 cut(s)	295
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	405, 610, 799
MnlI	CCTC	6 cut(s)	93, 110, 163, 430, 462, 492
Mox20I	TGGCCA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	5 cut(s)	117, 237, 462, 536, 762
Msp20I	TGGCCA	1 cut(s)	295
MspR9I	CCNGG	3 cut(s)	385, 691, 827
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	3 cut(s)	385, 691, 827
MwoI	GCNNNNNNNGC	4 cut(s)	256, 359, 499, 772
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	5 cut(s)	180, 205, 274, 427, 709
NlaIII	CATG	3 cut(s)	212, 509, 803
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	1 cut(s)	509
PagI	TCATGA	1 cut(s)	208
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	371, 694
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	3 cut(s)	404, 610, 799
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	404, 610, 799
PpuMI	RGGWCCY	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	383, 689, 825
PspGI	CCWGG	3 cut(s)	383, 689, 825
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	568
PspPPI	RGGWCCY	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	274, 427
RsaI	GTAC	3 cut(s)	202, 225, 787
RsaNI	GTAC	3 cut(s)	201, 224, 786
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	117, 237, 462, 536, 762
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	5 cut(s)	180, 205, 274, 427, 709
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	3 cut(s)	405, 610, 799
ScrFI	CCNGG	3 cut(s)	385, 691, 827
SfaNI	GCATC	2 cut(s)	36, 118
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	572, 624
SmoI	CTYRAG	2 cut(s)	572, 624
Sse9I	AATT	5 cut(s)	12, 403, 605, 703, 759
SsiI	CCGC	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	3 cut(s)	383, 689, 825
TaaI	ACNGT	2 cut(s)	94, 662
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	12, 403, 605, 703, 759
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	371, 694
Tru1I	TTAA	5 cut(s)	117, 237, 462, 536, 762
Tru9I	TTAA	5 cut(s)	117, 237, 462, 536, 762
TscAI	CASTG	2 cut(s)	115, 491
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	115, 491
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.