RchiOBHm_Chr3g0465301

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002704
Physical Location & Seq
Reverse (-)
12117726 .. 12118945
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43146

Sequence Viewer

Length: 594 bp
ATGAAAAAGGGCTCAACAGGCTTTAAACCTGAAAACTTTTCTCAACCCGACCTACCAAGTACTTGGAAAGCAATGGAAGCACTGTATGATTCTGGCAAGGCCAAGGCTATAGGAGTTAGCAATTTTTCCACAAAAAAACTTGGAGATCTGTTATCGGTGGCACGCATACCTCCTGCTGTTAACCAAGTGGAATTGCACCCCCAATGGCAGCAGCCAAAGCTAAAAGCATTCTGCCAATCTAAGGGAGTCCACTTAACTGGGTATTCGCCATTGGGATCCCCGGGTACAAGTAGTATTAAGGGTGATGTCCTTAAGAATCCGGTTCTTGCATTGGTAGCAGAGAAGCTGGGCAAGACTCCTGCACAAGTGGCTCTCCGTTGGGGGCTACAGTCGGGTCACAGTGTGCTGCCTAAGAGCACAAAGGAGGCGAGGATCAAGGAGAATTTTGATGTTTTTGATTGGTCCATACCTGAGGACTTGGTTTCGAAGTTTTCTGATATAAAGCAGGAGAGGCTGCTTAAAGGCACTGGATTCGTCAATGAGACTCACGGTTTCTACAAGAACATTGAGGAACTTTGGGATGGAGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

197

Amino Acids

21.68

Weight (kDa)

9.2

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 18 - 165 1.4e-26 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 270, 283, 440
AcsI RAATTY 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 403
AfaI GTAC 2 cut(s) 61, 286
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 311
AluBI AGCT 2 cut(s) 220, 346
AluI AGCT 2 cut(s) 220, 346
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 3 cut(s) 270, 283, 440
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 4 cut(s) 208, 211, 406, 514
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 471
BamHI GGATCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 4 cut(s) 220, 223, 393, 501
BccI CCATC 1 cut(s) 575
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BcnI CCSGG 2 cut(s) 281, 282
BcoDI GTCTC 1 cut(s) 536
BfmI CTRYAG 2 cut(s) 108, 386
BfrI CTTAAG 1 cut(s) 311
BglII AGATCT 1 cut(s) 145
BisI GCNGC 4 cut(s) 209, 212, 407, 515
BlsI GCNGC 4 cut(s) 210, 213, 408, 516
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 281, 282
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 281, 282
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 281, 282
BsaJI CCNNGG 3 cut(s) 102, 279, 280
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 262, 532
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 102, 279, 280
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 262, 532
BseXI GCAGC 4 cut(s) 220, 223, 393, 501
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 2 cut(s) 281, 320
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 14, 419
Bsp143I GATC 3 cut(s) 145, 275, 432
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 3 cut(s) 270, 283, 440
BspT104I TTCGAA 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 2 cut(s) 262, 532
BssECI CCNNGG 3 cut(s) 102, 279, 280
BssMI GATC 3 cut(s) 145, 275, 432
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 4 cut(s) 84, 390, 401, 551
BstAFI CTTAAG 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 240, 411, 471
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 3 cut(s) 148, 278, 435
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 145, 275, 432
BstMWI GCNNNNNNNGC 6 cut(s) 18, 77, 217, 335, 368, 511
BstSCI CCNGG 2 cut(s) 279, 280
BstSFI CTRYAG 2 cut(s) 108, 386
BstV1I GCAGC 4 cut(s) 220, 223, 393, 501
BstX2I RGATCY 2 cut(s) 145, 275
BstXI CCANNNNNNTGG 2 cut(s) 63, 257
BstYI RGATCY 2 cut(s) 145, 275
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 3 cut(s) 80, 406, 525
Cac8I GCNNGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 462
Cfr9I CCCGGG 1 cut(s) 280
Csp6I GTAC 2 cut(s) 60, 285
CviQI GTAC 2 cut(s) 60, 285
DdeI CTNAG 3 cut(s) 240, 411, 471
DpnI GATC 3 cut(s) 147, 277, 434
DpnII GATC 3 cut(s) 145, 275, 432
DraI TTTAAA 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 5 cut(s) 87, 110, 167, 467, 500
Fnu4HI GCNGC 4 cut(s) 209, 212, 407, 515
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 209, 212, 407, 515
GluI GCNGC 4 cut(s) 209, 212, 407, 515
GsaI CCCAGC 1 cut(s) 350
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 281, 320
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 6 cut(s) 89, 246, 316, 355, 531, 544
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 281, 320
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 181, 250
Hpy188I TCNGA 1 cut(s) 496
Hpy8I GTNNAC 2 cut(s) 181, 250
HpyCH4III ACNGT 4 cut(s) 84, 390, 401, 551
HpyCH4V TGCA 3 cut(s) 196, 329, 362
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 77, 217, 335, 368, 511
HpyF3I CTNAG 3 cut(s) 240, 411, 471
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 145, 275, 432
Lsp1109I GCAGC 4 cut(s) 220, 223, 393, 501
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 147, 277, 434
MboI GATC 3 cut(s) 145, 275, 432
MflI RGATCY 2 cut(s) 145, 275
MhlI GDGCHC 2 cut(s) 14, 419
MluCI AATT 4 cut(s) 121, 191, 442, 587
MlyI GAGTC 3 cut(s) 255, 349, 538
MnlI CCTC 6 cut(s) 180, 418, 423, 466, 504, 562
MseI TTAA 6 cut(s) 24, 180, 254, 297, 312, 519
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 281, 320
MspR9I CCNGG 2 cut(s) 281, 282
Mva1269I GAATGC 1 cut(s) 227
MwoI GCNNNNNNNGC 6 cut(s) 18, 77, 217, 335, 368, 511
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 3 cut(s) 145, 275, 432
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 395
NspV TTCGAA 1 cut(s) 485
PctI GAATGC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 89, 316, 531
PkrI GCNGC 4 cut(s) 210, 213, 408, 516
PleI GAGTC 3 cut(s) 254, 349, 538
PpsI GAGTC 3 cut(s) 254, 349, 538
PspFI CCCAGC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 462
PsuI RGATCY 2 cut(s) 145, 275
RsaI GTAC 2 cut(s) 61, 286
RsaNI GTAC 2 cut(s) 60, 285
SaqAI TTAA 6 cut(s) 24, 180, 254, 297, 312, 519
SatI GCNGC 4 cut(s) 209, 212, 407, 515
Sau3AI GATC 3 cut(s) 145, 275, 432
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 3 cut(s) 255, 349, 538
ScrFI CCNGG 2 cut(s) 281, 282
SduI GDGCHC 2 cut(s) 14, 419
SetI ASST 6 cut(s) 31, 54, 172, 222, 348, 472
SfcI CTRYAG 2 cut(s) 108, 386
SfuI TTCGAA 1 cut(s) 485
SinI GGWCC 1 cut(s) 462
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 121, 191, 442, 587
StyD4I CCNGG 2 cut(s) 279, 280
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 84, 390, 401, 551
TaqI TCGA 1 cut(s) 485
TasI AATT 4 cut(s) 121, 191, 442, 587
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 3 cut(s) 89, 316, 531
Tru1I TTAA 6 cut(s) 24, 180, 254, 297, 312, 519
Tru9I TTAA 6 cut(s) 24, 180, 254, 297, 312, 519
TscAI CASTG 3 cut(s) 87, 406, 532
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 208, 211, 406, 514
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 365
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 3 cut(s) 87, 406, 532
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 1 cut(s) 442
XmaI CCCGGG 1 cut(s) 280
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.