Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

37382463 .. 37384729

Gene Structure 2267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGAACGCAATTCGGTTTTTTGAGTTGAACACCGGCGCCAAGATGCCTTCTTTAGGCTTAGGCACTTATCGCTCCGATACTCATCTCGTCGGCGACGTCCTCACCTCTGCAATTAAGATTGGATATCGCCATATTGACTGTGCCCAAATGTATGGAAATGAGAAGGAGATTGGTGATGCTTTGAAGAAGCTATGTAATGATGGGATAGTGAAGCGTGAGGAATTATGGGTCACTTCTAAACTCTGGTGTACTGATCACGAACCAGAAGATGTACCAAGGGCATTTGATAAAACTTTGCAAGATTTGCAACTTGACTATCTGGATCTTTATCTTATGCATTGGCCAGTCAGCATGAAAAAGGGGTCAGTTGGCTCTGATCCTGAAAAATTTACCACACCTAACATACCCAGTACATGGAAAGCAATGGAGGCACTGTATGATTCGGGCAAGGCCAGGGCAATTGGAGTCAGCAATTTCTCATCAAAGAAGCTTGGAGAACTGTTAGAGGTGGCACGAATACATCCAGCAGTTAATCAAGTTGAGTTGCACCCTCAATGGCAGCAAGCTAAGCTGCATTCTTTCTGTAAATCTAAGGGAATCCACTTAACTGGATATGCACCATTGGGAAGGAAGAAGGTGCTTGAGCTTTCCATTGTGAATATGGTGGCAGAAAAATTGGGCAAGACTCCTGCACAAGTAGTTCTTCGGTGGGCGCTACAAATGGGTCACAGTGTAGTGCCTAAAAGCACAACTCAGACGAGGATTCAGGAAAATTTTAATATTTTTGATTGGTCTATACCTGATAACTTGTTTGCCAAGTTTTCCGAAATTGAGCAGGAGAGATTGCTTAAAGGTACTGCATTCGTCCACAAGACTCACGGTTTTTACAAGACCATTGAGGAACTCTGGGATGGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

307

Amino Acids

34.75

Weight (kDa)

7.71

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	21 - 278	2.8e-49	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	417
AclWI	GGATC	2 cut(s)	333, 374
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	389, 775
AcyI	GRCGYC	2 cut(s)	39, 99
AfaI	GTAC	4 cut(s)	253, 276, 415, 859
AfiI	CCNNNNNNNGG	2 cut(s)	56, 417
AgsI	TTSAA	2 cut(s)	31, 187
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	5 cut(s)	193, 493, 569, 574, 649
AluI	AGCT	5 cut(s)	193, 493, 569, 574, 649
AlwI	GGATC	2 cut(s)	333, 374
AoxI	GGCC	2 cut(s)	344, 453
ApeKI	GCWGC	2 cut(s)	562, 574
ApoI	RAATTY	2 cut(s)	389, 775
AspLEI	GCGC	2 cut(s)	41, 718
AsuHPI	GGTGA	2 cut(s)	97, 188
BaeGI	GKGCMC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	561, 574
BccI	CCATC	2 cut(s)	197, 908
BciT130I	CCWGG	1 cut(s)	457
BclI	TGATCA	1 cut(s)	256
BfoI	RGCGCY	2 cut(s)	42, 719
BisI	GCNGC	2 cut(s)	563, 575
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	2 cut(s)	564, 576
Bme1390I	CCNGG	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	36, 169
BmuI	ACTGGG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	665
BsaBI	GATNNNNATC	2 cut(s)	84, 330
BsaHI	GRCGYC	2 cut(s)	39, 99
BsaJI	CCNNGG	2 cut(s)	278, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 417
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	347, 411, 616
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	84, 330
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	278, 456
BseGI	GGATG	2 cut(s)	523, 919
BseJI	GATNNNNATC	2 cut(s)	84, 330
BseLI	CCNNNNNNNGG	2 cut(s)	56, 417
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	3 cut(s)	347, 411, 616
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	561, 574
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	346, 455
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	56, 417
BsmI	GAATGC	2 cut(s)	577, 863
BsnI	GGCC	2 cut(s)	346, 455
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	256, 325, 379
Bsp1720I	GCTNAGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	346, 455
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	333, 374
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	347, 411, 616
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	278, 456
BssMI	GATC	3 cut(s)	256, 325, 379
BssNI	GRCGYC	2 cut(s)	39, 99
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	5 cut(s)	143, 438, 504, 734, 884
BstACI	GRCGYC	2 cut(s)	39, 99
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	4 cut(s)	61, 570, 594, 756
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	523, 919
BstH2I	RGCGCY	2 cut(s)	42, 719
BstHHI	GCGC	2 cut(s)	41, 718
BstKTI	GATC	3 cut(s)	259, 328, 382
BstMBI	GATC	3 cut(s)	256, 325, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 307, 431, 571
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	561, 574
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	2 cut(s)	155, 611
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	346, 455
BtsCI	GGATG	2 cut(s)	523, 919
BtsIMutI	CAGTG	2 cut(s)	434, 739
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	41, 718
Cfr10I	RCCGGY	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	252, 275, 414, 858
CviAII	CATG	2 cut(s)	355, 417
CviJI	RGCY	9 cut(s)	60, 193, 346, 375, 455, 493, 569, 574, 649
CviKI_1	RGCY	9 cut(s)	60, 193, 346, 375, 455, 493, 569, 574, 649
CviQI	GTAC	4 cut(s)	252, 275, 414, 858
DdeI	CTNAG	4 cut(s)	61, 570, 594, 756
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	258, 327, 381
DpnII	GATC	3 cut(s)	256, 325, 379
EaeI	YGGCCR	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	2 cut(s)	358, 420
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FatI	CATG	2 cut(s)	354, 416
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	563, 575
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	2 cut(s)	563, 575
GlaI	GCGC	2 cut(s)	40, 717
GluI	GCNGC	2 cut(s)	563, 575
HaeII	RGCGCY	2 cut(s)	42, 719
HaeIII	GGCC	2 cut(s)	346, 455
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	2 cut(s)	41, 718
Hin1I	GRCGYC	2 cut(s)	39, 99
Hin1II	CATG	2 cut(s)	358, 420
Hin6I	GCGC	2 cut(s)	39, 716
HinP1I	GCGC	2 cut(s)	39, 716
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	443, 468, 600, 688, 766, 877
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	97, 188
Hpy166II	GTNNAC	2 cut(s)	252, 871
Hpy188I	TCNGA	4 cut(s)	79, 379, 759, 829
Hpy188III	TCNNGA	4 cut(s)	260, 323, 383, 770
Hpy8I	GTNNAC	2 cut(s)	252, 871
Hpy99I	CGWCG	2 cut(s)	95, 101
HpyAV	CCTTC	4 cut(s)	60, 160, 624, 631
HpyCH4III	ACNGT	5 cut(s)	143, 438, 504, 734, 884
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	9 cut(s)	113, 301, 310, 340, 550, 577, 620, 695, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 307, 431, 571
HpyF3I	CTNAG	4 cut(s)	61, 570, 594, 756
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	39, 99
Hsp92II	CATG	2 cut(s)	358, 420
HspAI	GCGC	2 cut(s)	39, 716
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	256, 325, 379
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	2 cut(s)	561, 574
LweI	GCATC	2 cut(s)	36, 169
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	232, 728
MalI	GATC	3 cut(s)	258, 327, 381
MboI	GATC	3 cut(s)	256, 325, 379
MboII	GAAGA	4 cut(s)	199, 281, 646, 698
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	9 cut(s)	12, 114, 224, 389, 462, 475, 677, 775, 831
MluNI	TGGCCA	1 cut(s)	346
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	477, 682, 871
MnlI	CCTC	8 cut(s)	113, 118, 214, 424, 502, 564, 756, 895
Mox20I	TGGCCA	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	5 cut(s)	117, 534, 608, 780, 852
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	457
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	2 cut(s)	577, 863
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	4 cut(s)	72, 307, 431, 571
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	3 cut(s)	256, 325, 379
NlaIII	CATG	2 cut(s)	358, 420
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	232, 728
NsiI	ATGCAT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	577, 863
PfeI	GAWTC	3 cut(s)	443, 600, 766
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	564, 576
PleI	GAGTC	3 cut(s)	476, 682, 871
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	476, 682, 871
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	4 cut(s)	253, 276, 415, 859
RsaNI	GTAC	4 cut(s)	252, 275, 414, 858
SaqAI	TTAA	5 cut(s)	117, 534, 608, 780, 852
SatI	GCNGC	2 cut(s)	563, 575
Sau3AI	GATC	3 cut(s)	256, 325, 379
SchI	GAGTC	3 cut(s)	477, 682, 871
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	36, 169
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	9 cut(s)	12, 114, 224, 389, 462, 475, 677, 775, 831
SspDI	GGCGCC	1 cut(s)	38
SspI	AATATT	1 cut(s)	784
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	5 cut(s)	143, 438, 504, 734, 884
TaiI	ACGT	1 cut(s)	102
TasI	AATT	9 cut(s)	12, 114, 224, 389, 462, 475, 677, 775, 831
TatI	WGTACW	2 cut(s)	251, 413
TfiI	GAWTC	3 cut(s)	443, 600, 766
Tru1I	TTAA	5 cut(s)	117, 534, 608, 780, 852
Tru9I	TTAA	5 cut(s)	117, 534, 608, 780, 852
TscAI	CASTG	2 cut(s)	441, 739
TseFI	GTSAC	2 cut(s)	232, 728
TseI	GCWGC	2 cut(s)	562, 574
Tsp45I	GTSAC	2 cut(s)	232, 728
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	441, 739
Van91I	CCANNNNNTGG	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	389, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.