Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

16941769 .. 16942765

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGAACGAAATTCGGTTTTTTGAGTTGAACACCGGCGCCAAGATTCCTTCCGTCGGCTTGGGCACATATCGCGCCGATACTTATGTCGTCAGCGACGTCATCGCCGCCGCAATTAAGATTGGGTATCGTCATATTGATTGTGCTCGGTTGTATGGAAATGAGAAGGAGATTGGTGGTGCTCTGAAAAAGCTATTTAATGACGGTGTAGTGAAGCGTGAGGACATATGGATCGACCTCCAAACTCTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

6.55

Isoelectric Point (pI)

15.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	108, 111
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	39, 99
AfiI	CCNNNNNNNGG	2 cut(s)	56, 247
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	2 cut(s)	148, 184
AlwI	GGATC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	41, 77
BaeGI	GKGCMC	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	148, 184
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
BmiI	GGNNCC	1 cut(s)	40
BsaHI	GRCGYC	2 cut(s)	39, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 247
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	56, 247
BseSI	GKGCMC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	148, 184
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	56, 247
Bsp1286I	GDGCHC	3 cut(s)	68, 148, 184
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	108, 111
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	2 cut(s)	39, 99
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	2 cut(s)	39, 99
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 77
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	88
CfoI	GCGC	2 cut(s)	41, 77
Cfr10I	RCCGGY	1 cut(s)	35
CviJI	RGCY	2 cut(s)	60, 193
CviKI_1	RGCY	2 cut(s)	60, 193
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaiI	YATR	6 cut(s)	70, 87, 135, 156, 227, 229
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	108, 111
Fsp4HI	GCNGC	2 cut(s)	108, 111
GlaI	GCGC	2 cut(s)	40, 76
GluI	GCNGC	2 cut(s)	108, 111
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	2 cut(s)	41, 77
Hin1I	GRCGYC	2 cut(s)	39, 99
Hin6I	GCGC	2 cut(s)	39, 75
HinP1I	GCGC	2 cut(s)	39, 75
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	36
Hpy188I	TCNGA	1 cut(s)	186
Hpy99I	CGWCG	2 cut(s)	59, 101
HpyAV	CCTTC	2 cut(s)	60, 160
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	39, 99
HspAI	GCGC	2 cut(s)	39, 75
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	2 cut(s)	49, 233
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	68, 148, 184
MluCI	AATT	2 cut(s)	12, 114
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	214, 248
MseI	TTAA	2 cut(s)	117, 198
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	109, 112
PluTI	GGCGCC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	117, 198
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	1 cut(s)	231
SduI	GDGCHC	3 cut(s)	68, 148, 184
SetI	ASST	3 cut(s)	102, 195, 240
SfoI	GGCGCC	1 cut(s)	40
SgeI	CNNG	6 cut(s)	48, 55, 73, 86, 159, 230
SgrAI	CRCCGGYG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	12, 114
SsiI	CCGC	2 cut(s)	108, 111
SspDI	GGCGCC	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	12, 114
TauI	GCSGC	2 cut(s)	110, 113
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	117, 198
Tru9I	TTAA	2 cut(s)	117, 198
TspGWI	ACGGA	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.