Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

23025831 .. 23030938

Gene Structure 5108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1150000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGGAAAGAAACCCGCCCCGGTATAGAATATCTTCACGTGACGGGAGCTTAATTCAAGCCGAACGATCTCCCATTTCGTGCTCAACCGAAACGCAGAGTGGTTCCACACAGACAGAGCGGGAGAAGCTAAAAATGGCGAACGCAATTCGGTTTTTTGAGTTGAACACCGGCGCCAAGATTCCTTCCGTCGGCTTGGGCACATATCGCGCCGATACTCATGTCGTCAGCGACGTCATCGCCGCCGCAATTAAGATTGGGTATCGTCATATTGATTGTGCTCAGATGTATGGAAATGAGAAGGAGATTGGTGATGCTCTGAAAAAGCTGTTTAATGACGGTGTAGTGAAGCGTGAGGACATATGGATCACCTCCAAACTCTGGTGTAGTGATCATGAACCAGAAGATGTACCAAAGGCATTTGACAAGACTTTGCAAGACTTGCAACTTGACTATCTGGATCTTTATCTTGTGCACTGGCCAGTGAGCATGAAGAAAGGGTCAGTTGGCTCTGATCCTCACAACCTAACCCAACCTAATATACCCAGTACATGGAAAGCAATGGAGGCACTCTTTGATTCTGGCAAGGCCAGGGCCATTGGAGTCTGCAATTTCTCTTCAAAGAAGCTCGGAGATCTGTTGGAGGTGGCACGAATACCTCCTGCAGTTAATCAAGTGGAATTGCACCCTCACTGGCAGCAACTAAAGCTGCACGCTTTCTGTAAATCCAAGGGAATTCACTTAACTGGATTTGCACCATTGGCGAGGAACAAGGTCCTTACGAATCCTATTGTGAATTTGGTGGCAGAAAAATTGGGCAAGACTACTGCCCAAGTGACTCTTCGGTGGGGGCTGCAAATGGGCCACAGTCTAGTGCCTAAAAGCACAAATCCAGAAAGGATACGGGAAAATTTTGATATTTTCGATTGGTCTATACCTGAAGACTTGTTTGCCAAGTTTTCTGAAATTAATCAGGAGAGGCTTATCAAAGGTACTGGTTTCGTGCATGAGACTCTGGGTGCATATAGGACCGTGGAAGAACTATGGGACGGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

353

Amino Acids

39.58

Weight (kDa)

7.18

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	74 - 324	9.4e-48	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	2 cut(s)	381, 552
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	210
AciI	CCGC	4 cut(s)	17, 121, 243, 246
AclWI	GGATC	3 cut(s)	374, 468, 509
AcoI	YGGCCR	1 cut(s)	479
AcsI	RAATTY	3 cut(s)	735, 796, 910
AcuI	CTGAAG	1 cut(s)	960
AcvI	CACGTG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	174, 234
AfaI	GTAC	3 cut(s)	411, 550, 994
AfiI	CCNNNNNNNGG	3 cut(s)	191, 381, 552
AgsI	TTSAA	3 cut(s)	59, 166, 621
AjnI	CCWGG	1 cut(s)	590
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AluBI	AGCT	5 cut(s)	51, 130, 328, 628, 709
AluI	AGCT	5 cut(s)	51, 130, 328, 628, 709
Alw21I	GWGCWC	3 cut(s)	86, 283, 477
Alw26I	GTCTC	1 cut(s)	1004
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	3 cut(s)	374, 468, 509
AoxI	GGCC	4 cut(s)	479, 588, 594, 862
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	697, 709, 853
ApoI	RAATTY	3 cut(s)	735, 796, 910
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	176, 212
AspS9I	GGNCC	4 cut(s)	594, 775, 862, 1029
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	323, 361
AvaII	GGWCC	2 cut(s)	775, 1029
BaeGI	GKGCMC	2 cut(s)	203, 477
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	948
Bbv12I	GWGCWC	3 cut(s)	86, 283, 477
BbvI	GCAGC	3 cut(s)	696, 709, 840
BciT130I	CCWGG	1 cut(s)	592
BciVI	GTATCC	1 cut(s)	894
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	1004
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	894
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	5 cut(s)	243, 246, 698, 710, 854
BlsI	GCNGC	5 cut(s)	244, 247, 699, 711, 855
Bme1390I	CCNGG	2 cut(s)	22, 592
Bme18I	GGWCC	2 cut(s)	775, 1029
BmgT120I	GGNCC	4 cut(s)	594, 775, 862, 1029
BmiI	GGNNCC	2 cut(s)	106, 175
BmrFI	CCNGG	2 cut(s)	22, 592
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	948
BpuMI	CCSGG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	2 cut(s)	174, 234
BsaJI	CCNNGG	4 cut(s)	20, 591, 729, 1032
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 381, 552
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	6 cut(s)	482, 482, 546, 698, 751, 1000
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	4 cut(s)	20, 591, 729, 1032
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	191, 381, 552
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	6 cut(s)	482, 482, 546, 698, 751, 1000
BseSI	GKGCMC	2 cut(s)	203, 477
BseXI	GCAGC	3 cut(s)	696, 709, 840
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	481, 590, 596, 864
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	3 cut(s)	86, 283, 477
BsiSI	CCGG	2 cut(s)	22, 171
BslI	CCNNNNNNNGG	3 cut(s)	191, 381, 552
BsmAI	GTCTC	1 cut(s)	1004
BsnI	GGCC	4 cut(s)	481, 590, 596, 864
Bsp1286I	GDGCHC	4 cut(s)	86, 203, 283, 477
Bsp143I	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
BspACI	CCGC	4 cut(s)	17, 121, 243, 246
BspANI	GGCC	4 cut(s)	481, 590, 596, 864
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	106, 175
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	3 cut(s)	374, 468, 509
BspT107I	GGYRCC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	6 cut(s)	482, 482, 546, 698, 751, 1000
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	20, 591, 729, 1032
BssMI	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
BssNI	GRCGYC	2 cut(s)	174, 234
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	341, 869, 1033
Bst6I	CTCTTC	2 cut(s)	622, 846
BstACI	GRCGYC	2 cut(s)	174, 234
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	1032
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 212
BstKTI	GATC	6 cut(s)	71, 369, 394, 463, 517, 637
BstMAI	GTCTC	1 cut(s)	1004
BstMBI	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 207, 442, 566, 706, 761
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	20, 590
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	2 cut(s)	203, 477
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	696, 709, 840
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	2 cut(s)	460, 634
BstYI	RGATCY	2 cut(s)	460, 634
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	4 cut(s)	481, 590, 596, 864
BtgI	CCRYGG	1 cut(s)	1032
BtgZI	GCGATG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	475, 489, 691
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	2 cut(s)	176, 212
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	594, 775, 862, 1029
Csp6I	GTAC	3 cut(s)	410, 549, 993
CviAII	CATG	5 cut(s)	221, 395, 490, 552, 1007
CviQI	GTAC	3 cut(s)	410, 549, 993
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	6 cut(s)	70, 368, 393, 462, 516, 636
DpnII	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
EaeI	YGGCCR	1 cut(s)	479
Eam1104I	CTCTTC	2 cut(s)	622, 846
EarI	CTCTTC	2 cut(s)	622, 846
Eco130I	CCWWGG	1 cut(s)	729
Eco47I	GGWCC	2 cut(s)	775, 1029
Eco57I	CTGAAG	1 cut(s)	960
Eco72I	CACGTG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	729
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	5 cut(s)	224, 398, 493, 555, 1010
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FatI	CATG	5 cut(s)	220, 394, 489, 551, 1006
FauI	CCCGC	2 cut(s)	24, 114
FauNDI	CATATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	243, 246, 698, 710, 854
Fsp4HI	GCNGC	5 cut(s)	243, 246, 698, 710, 854
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	2 cut(s)	175, 211
GluI	GCNGC	5 cut(s)	243, 246, 698, 710, 854
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	481, 590, 596, 864
HapII	CCGG	2 cut(s)	22, 171
HhaI	GCGC	2 cut(s)	176, 212
Hin1I	GRCGYC	2 cut(s)	174, 234
Hin1II	CATG	5 cut(s)	224, 398, 493, 555, 1010
Hin6I	GCGC	2 cut(s)	174, 210
HinP1I	GCGC	2 cut(s)	174, 210
HinfI	GANTC	6 cut(s)	181, 578, 603, 784, 838, 1012
HpaII	CCGG	2 cut(s)	22, 171
HphI	GGTGA	2 cut(s)	323, 361
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	5 cut(s)	285, 321, 514, 632, 964
Hpy188III	TCNNGA	4 cut(s)	395, 458, 893, 974
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	194, 236
HpyAV	CCTTC	2 cut(s)	195, 295
HpyCH4III	ACNGT	3 cut(s)	341, 869, 1033
HpyCH4IV	ACGT	2 cut(s)	40, 234
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 207, 442, 566, 706, 761
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	40, 234
Hsp92I	GRCGYC	2 cut(s)	174, 234
Hsp92II	CATG	5 cut(s)	224, 398, 493, 555, 1010
HspAI	GCGC	2 cut(s)	174, 210
KasI	GGCGCC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	3 cut(s)	696, 709, 840
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	2 cut(s)	40, 234
MaeIII	GTNAC	2 cut(s)	41, 835
MalI	GATC	6 cut(s)	70, 368, 393, 462, 516, 636
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
MboII	GAAGA	7 cut(s)	27, 416, 505, 609, 833, 953, 1049
MflI	RGATCY	2 cut(s)	460, 634
MhlI	GDGCHC	4 cut(s)	86, 203, 283, 477
MlsI	TGGCCA	1 cut(s)	481
MluNI	TGGCCA	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	3 cut(s)	612, 832, 1006
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	9 cut(s)	349, 382, 528, 559, 637, 669, 699, 759, 972
Mox20I	TGGCCA	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	481
MseI	TTAA	6 cut(s)	53, 252, 333, 669, 743, 969
Msp20I	TGGCCA	1 cut(s)	481
MspI	CCGG	2 cut(s)	22, 171
MspR9I	CCNGG	2 cut(s)	22, 592
MvaI	CCWGG	1 cut(s)	592
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	6 cut(s)	127, 207, 442, 566, 706, 761
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
NlaIII	CATG	5 cut(s)	224, 398, 493, 555, 1010
NlaIV	GGNNCC	2 cut(s)	106, 175
NmuCI	GTSAC	2 cut(s)	41, 835
PagI	TCATGA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	181, 578, 784
PflMI	CCANNNNNTGG	2 cut(s)	381, 552
PkrI	GCNGC	5 cut(s)	244, 247, 699, 711, 855
PleI	GAGTC	3 cut(s)	611, 832, 1006
PluTI	GGCGCC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
PpsI	GAGTC	3 cut(s)	611, 832, 1006
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	775
PshBI	ATTAAT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	590
PspCI	CACGTG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	106, 175
PspPI	GGNCC	4 cut(s)	594, 775, 862, 1029
PspPPI	RGGWCCY	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	460, 634
RsaI	GTAC	3 cut(s)	411, 550, 994
RsaNI	GTAC	3 cut(s)	410, 549, 993
SaqAI	TTAA	6 cut(s)	53, 252, 333, 669, 743, 969
SatI	GCNGC	5 cut(s)	243, 246, 698, 710, 854
Sau3AI	GATC	6 cut(s)	68, 366, 391, 460, 514, 634
Sau96I	GGNCC	4 cut(s)	594, 775, 862, 1029
SchI	GAGTC	3 cut(s)	612, 832, 1006
ScrFI	CCNGG	2 cut(s)	22, 592
SduI	GDGCHC	4 cut(s)	86, 203, 283, 477
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	663
SfoI	GGCGCC	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	775, 1029
SsiI	CCGC	4 cut(s)	17, 121, 243, 246
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	872
StyD4I	CCNGG	2 cut(s)	20, 590
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	3 cut(s)	341, 869, 1033
TaiI	ACGT	2 cut(s)	43, 237
TaqI	TCGA	1 cut(s)	924
TatI	WGTACW	1 cut(s)	548
TauI	GCSGC	2 cut(s)	245, 248
TfiI	GAWTC	3 cut(s)	181, 578, 784
Tru1I	TTAA	6 cut(s)	53, 252, 333, 669, 743, 969
Tru9I	TTAA	6 cut(s)	53, 252, 333, 669, 743, 969
TscAI	CASTG	3 cut(s)	482, 489, 698
TseFI	GTSAC	2 cut(s)	41, 835
TseI	GCWGC	3 cut(s)	697, 709, 853
Tsp45I	GTSAC	2 cut(s)	41, 835
TspDTI	ATGAA	2 cut(s)	411, 506
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	3 cut(s)	482, 489, 698
Van91I	CCANNNNNTGG	2 cut(s)	381, 552
VneI	GTGCAC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	775, 1029
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	3 cut(s)	735, 796, 910
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	872
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.