Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005190.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

17360 .. 18056

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005190.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgggagtccacttaactgggtattcgccattgggatccccgggtacaagtagtattaagggtgatgtccttaagaatccggttcttgcattggtagcagagaagctgggcaagactcctgcacaagtggctctccgttgggggctacagtcgggtcacagtgtgctgcctaagagcacaaaggaggcgaggatcaaggagaattttgatgtttttgattggtccatacctgaggacttggtttcgaagttttctgatataaagcaggagaggctgcttaaaggcactggattcgtcaatgagactcacggtttctacaagaacattgaggaactttgggatggagaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

117

Amino Acids

12.9

Weight (kDa)

6.28

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	30, 43, 200
AcsI	RAATTY	1 cut(s)	202
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	46
AflII	CTTAAG	1 cut(s)	71
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	30, 43, 200
Ama87I	CYCGRG	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	166, 274
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	2 cut(s)	41, 42
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	153, 261
BccI	CCATC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcnI	CCSGG	2 cut(s)	41, 42
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	146
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	167, 275
BlsI	GCNGC	2 cut(s)	168, 276
Bme1390I	CCNGG	2 cut(s)	41, 42
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	41, 42
BmrI	ACTGGG	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	41, 42
BsaJI	CCNNGG	2 cut(s)	39, 40
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	22, 292
Bse21I	CCTNAGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	39, 40
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	22, 292
BseXI	GCAGC	2 cut(s)	153, 261
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	41, 80
BsmAI	GTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	35, 192
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	3 cut(s)	30, 43, 200
BspT104I	TTCGAA	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	22, 292
BssECI	CCNNGG	2 cut(s)	39, 40
BssMI	GATC	2 cut(s)	35, 192
Bst4CI	ACNGT	3 cut(s)	150, 161, 311
BstAFI	CTTAAG	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	171, 231
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	38, 195
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	35, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 128, 271
BstSCI	CCNGG	2 cut(s)	39, 40
BstSFI	CTRYAG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	153, 261
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	166, 285
Cfr13I	GGNCC	1 cut(s)	222
Cfr9I	CCCGGG	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	45
CviJI	RGCY	4 cut(s)	106, 131, 145, 274
CviKI_1	RGCY	4 cut(s)	106, 131, 145, 274
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	171, 231
DpnI	GATC	2 cut(s)	37, 194
DpnII	GATC	2 cut(s)	35, 192
DraIII	CACNNNGTG	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	40
FaiI	YATR	2 cut(s)	227, 260
Fnu4HI	GCNGC	2 cut(s)	167, 275
Fsp4HI	GCNGC	2 cut(s)	167, 275
GluI	GCNGC	2 cut(s)	167, 275
GsaI	CCCAGC	1 cut(s)	110
HapII	CCGG	2 cut(s)	41, 80
HinfI	GANTC	5 cut(s)	6, 76, 115, 291, 304
HpaII	CCGG	2 cut(s)	41, 80
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	150, 161, 311
HpyCH4V	TGCA	2 cut(s)	89, 122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 128, 271
HpyF3I	CTNAG	2 cut(s)	171, 231
Kzo9I	GATC	2 cut(s)	35, 192
LpnPI	CCDG	8 cut(s)	3, 54, 92, 93, 132, 243, 251, 273
Lsp1109I	GCAGC	2 cut(s)	153, 261
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	37, 194
MboI	GATC	2 cut(s)	35, 192
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	202, 347
MlyI	GAGTC	3 cut(s)	15, 109, 298
MnlI	CCTC	5 cut(s)	178, 183, 226, 264, 322
MseI	TTAA	4 cut(s)	14, 57, 72, 279
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	2 cut(s)	41, 80
MspR9I	CCNGG	2 cut(s)	41, 42
MwoI	GCNNNNNNNGC	3 cut(s)	95, 128, 271
NciI	CCSGG	2 cut(s)	41, 42
NdeII	GATC	2 cut(s)	35, 192
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	76, 291
PkrI	GCNGC	2 cut(s)	168, 276
PleI	GAGTC	3 cut(s)	14, 109, 298
PpsI	GAGTC	3 cut(s)	14, 109, 298
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	14, 57, 72, 279
SatI	GCNGC	2 cut(s)	167, 275
Sau3AI	GATC	2 cut(s)	35, 192
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	3 cut(s)	15, 109, 298
ScrFI	CCNGG	2 cut(s)	41, 42
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	2 cut(s)	108, 232
SfcI	CTRYAG	1 cut(s)	146
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	202, 347
StyD4I	CCNGG	2 cut(s)	39, 40
TaaI	ACNGT	3 cut(s)	150, 161, 311
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	202, 347
TfiI	GAWTC	2 cut(s)	76, 291
Tru1I	TTAA	4 cut(s)	14, 57, 72, 279
Tru9I	TTAA	4 cut(s)	14, 57, 72, 279
TscAI	CASTG	2 cut(s)	166, 292
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	166, 274
Tsp45I	GTSAC	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	125
TspMI	CCCGGG	1 cut(s)	40
TspRI	CASTG	2 cut(s)	166, 292
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	202
XmaI	CCCGGG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.