Rroxscaffold_6G00415140

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002704
Physical Location & Seq
Forward (+)
37379760 .. 37381850
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415140.1

Sequence Viewer

Length: 1017 bp
ATGGCGAAATCGATTCGATTCTTTGATCTGAACACTGGAGCCAAGATTCCGGCCGTCGGTTTGGGGACGTGGCAGGCTGAGCCCGGCGTCGTTGGTGATGCTGTCACCGCCGCCATCAAGGTTGGGTATAGGCATATTGATTGTGCTCAAATTTATGGAAACGAAAAAGAGATTGGTTGTGCTCTGAAGAAGCTATATGATGATGGTGTAGTGAAGCGTGAGGACTTGTGGATCACTTCAAAACTCTGGTGTAGTAATCATGCACCAGAAGATGTGCCAAAGGCACTAGATAGCACTCTGCAGGACTTGCAAAGCGACTATCTCGATCTGTACCTGATTCACTGGCCAGTCAGCATGAAAAAGGGCTCAGCAGGCTTTAAACCTGAAAACCTTTCCCAACCCGACCTACCTCGTACTTGGAAAGCAATGGAAGCACTGTATGATTCTGGCAAGGCCAAGGCTATAGGAGTTAGCAATTTTTCCACAAAAAAACTTGGAGATCTGTTATCGGTGGCACGCATACCTCCTGCTGTTAACCAAGTGGAATTGCATCCCCAATGGCAGCAGCCAAAGCTAAAAGCATTCTGCCAATCTAAGGGAGTCCACTTAACTGGATATTCGCCATTGGGATCCCCAGGTACAAGTAGTATTAAGGGTGATGTCCTTAAGAATCCGGTTCTTGCATTAGTAGCAGAGAAGCTGGGCAAGAGTCCTGCACAAGTGGCTCTCCGTTGGGGGCTACAATCGGGTCACAGTGTGCTGCCTAAGAGCACGAAGGAGGCGAGGATCAAGGAGAATTTTGATGTTTTTGATTGGTCCATACCTGAGGACTTGGCTTCAAAGTTTTCTAATATAAAGCAGGCAGGCATCTTGTCTTTATTACTTCTCTGTTCAGTCTTTTTGTTCTTGAATCCCATTCATCTTTCGGTGGAGAGGCTGCTTAAAGGCACTGGATTCGTCAATGAGACTCACGGTTTCTACAAGAACATTGAGGAACTTTGGGATGGAGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

338

Amino Acids

37.17

Weight (kDa)

8.43

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 278 1e-51 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 111
AclWI GGATC 4 cut(s) 239, 624, 637, 794
AcoI YGGCCR 2 cut(s) 51, 344
AcsI RAATTY 2 cut(s) 150, 796
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 757
AfaI GTAC 3 cut(s) 332, 415, 640
AfiI CCNNNNNNNGG 2 cut(s) 56, 595
AflII CTTAAG 1 cut(s) 665
AgsI TTSAA 3 cut(s) 240, 840, 910
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 3 cut(s) 193, 574, 700
AluI AGCT 3 cut(s) 193, 574, 700
Alw21I GWGCWC 3 cut(s) 148, 184, 773
Alw26I GTCTC 1 cut(s) 959
AlwI GGATC 4 cut(s) 239, 624, 637, 794
AoxI GGCC 3 cut(s) 51, 344, 453
ApeKI GCWGC 4 cut(s) 562, 565, 760, 937
ApoI RAATTY 2 cut(s) 150, 796
AspS9I GGNCC 1 cut(s) 816
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 97, 107, 668
AvaII GGWCC 1 cut(s) 816
AxyI CCTNAGG 1 cut(s) 825
BalI TGGCCA 1 cut(s) 346
BamHI GGATCC 1 cut(s) 629
BanII GRGCYC 2 cut(s) 84, 368
Bbv12I GWGCWC 3 cut(s) 148, 184, 773
BbvI GCAGC 4 cut(s) 574, 577, 747, 924
BccI CCATC 3 cut(s) 122, 197, 998
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 1 cut(s) 636
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 959
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 299, 462
BfrI CTTAAG 1 cut(s) 665
BglII AGATCT 1 cut(s) 499
BisI GCNGC 5 cut(s) 111, 563, 566, 761, 938
BlpI GCTNAGC 2 cut(s) 78, 367
BlsI GCNGC 5 cut(s) 112, 564, 567, 762, 939
Bme1390I CCNGG 2 cut(s) 84, 636
Bme18I GGWCC 1 cut(s) 816
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 2 cut(s) 40, 631
BmrFI CCNGG 2 cut(s) 84, 636
BmsI GCATC 3 cut(s) 88, 559, 876
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 2 cut(s) 78, 367
BpuMI CCSGG 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 456, 634
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 595
Bse1I ACTGG 5 cut(s) 40, 347, 347, 616, 955
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 636
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 456, 634
BseGI GGATG 2 cut(s) 550, 1009
BseLI CCNNNNNNNGG 2 cut(s) 56, 595
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 3 cut(s) 69, 381, 816
BseNI ACTGG 5 cut(s) 40, 347, 347, 616, 955
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 574, 577, 747, 924
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 699
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 3 cut(s) 53, 346, 455
BshVI ATCGAT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 3 cut(s) 148, 184, 773
BsiSI CCGG 3 cut(s) 50, 84, 674
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 56, 595
BsmAI GTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 3 cut(s) 53, 346, 455
Bsp1286I GDGCHC 5 cut(s) 84, 148, 184, 368, 773
Bsp143I GATC 6 cut(s) 25, 231, 325, 499, 629, 786
Bsp1720I GCTNAGC 2 cut(s) 78, 367
BspACI CCGC 2 cut(s) 108, 111
BspANI GGCC 3 cut(s) 53, 346, 455
BspCNI CTCAG 3 cut(s) 70, 380, 817
BspDI ATCGAT 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 40, 631
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 4 cut(s) 239, 624, 637, 794
BspTI CTTAAG 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 5 cut(s) 40, 347, 347, 616, 955
BssECI CCNNGG 2 cut(s) 456, 634
BssMI GATC 6 cut(s) 25, 231, 325, 499, 629, 786
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 3 cut(s) 438, 755, 974
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 5 cut(s) 75, 373, 517, 861, 865
BstDEI CTNAG 5 cut(s) 78, 367, 594, 765, 825
BstF5I GGATG 2 cut(s) 550, 1009
BstKTI GATC 6 cut(s) 28, 234, 328, 502, 632, 789
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 6 cut(s) 25, 231, 325, 499, 629, 786
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 8 cut(s) 79, 107, 307, 372, 431, 571, 689, 722
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 2 cut(s) 82, 634
BstSFI CTRYAG 2 cut(s) 299, 462
BstV1I GCAGC 4 cut(s) 574, 577, 747, 924
BstX2I RGATCY 2 cut(s) 499, 629
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 2 cut(s) 499, 629
BstZI CGGCCG 1 cut(s) 51
Bsu15I ATCGAT 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 3 cut(s) 53, 346, 455
BsuTUI ATCGAT 1 cut(s) 11
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 550, 1009
BtsIMutI CAGTG 5 cut(s) 33, 340, 434, 760, 948
Cac8I GCNNGC 5 cut(s) 75, 373, 517, 861, 865
Cfr13I GGNCC 1 cut(s) 816
ClaI ATCGAT 1 cut(s) 11
CseI GACGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 331, 414, 639
CviAII CATG 2 cut(s) 260, 355
CviQI GTAC 3 cut(s) 331, 414, 639
DdeI CTNAG 5 cut(s) 78, 367, 594, 765, 825
DpnI GATC 6 cut(s) 27, 233, 327, 501, 631, 788
DpnII GATC 6 cut(s) 25, 231, 325, 499, 629, 786
DraI TTTAAA 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 757
EaeI YGGCCR 2 cut(s) 51, 344
EagI CGGCCG 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 84, 368
Eco47I GGWCC 1 cut(s) 816
Eco52I CGGCCG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 84, 368
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 2 cut(s) 263, 358
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 259, 354
Fnu4HI GCNGC 5 cut(s) 111, 563, 566, 761, 938
FokI GGATG 1 cut(s) 537
FriOI GRGCYC 2 cut(s) 84, 368
Fsp4HI GCNGC 5 cut(s) 111, 563, 566, 761, 938
FspBI CTAG 1 cut(s) 287
GluI GCNGC 5 cut(s) 111, 563, 566, 761, 938
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 3 cut(s) 53, 346, 455
HapII CCGG 3 cut(s) 50, 84, 674
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 263, 358
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 3 cut(s) 50, 84, 674
HphI GGTGA 3 cut(s) 97, 107, 668
Hpy166II GTNNAC 2 cut(s) 535, 604
Hpy188I TCNGA 2 cut(s) 30, 186
Hpy188III TCNNGA 2 cut(s) 323, 907
Hpy8I GTNNAC 2 cut(s) 535, 604
Hpy99I CGWCG 2 cut(s) 59, 92
HpyAV CCTTC 1 cut(s) 769
HpyCH4III ACNGT 3 cut(s) 438, 755, 974
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 263, 301, 310, 550, 683, 716
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 107, 307, 372, 431, 571, 689, 722
HpyF3I CTNAG 5 cut(s) 78, 367, 594, 765, 825
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 263, 358
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 6 cut(s) 25, 231, 325, 499, 629, 786
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 4 cut(s) 574, 577, 747, 924
LweI GCATC 3 cut(s) 88, 559, 876
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 103, 749
MalI GATC 6 cut(s) 27, 233, 327, 501, 631, 788
MboI GATC 6 cut(s) 25, 231, 325, 499, 629, 786
MboII GAAGA 2 cut(s) 199, 281
MflI RGATCY 2 cut(s) 499, 629
MhlI GDGCHC 5 cut(s) 84, 148, 184, 368, 773
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 4 cut(s) 150, 475, 545, 796
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 3 cut(s) 609, 718, 961
MnlI CCTC 8 cut(s) 214, 420, 534, 772, 777, 820, 927, 985
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 6 cut(s) 378, 534, 608, 651, 666, 942
Msp20I TGGCCA 1 cut(s) 346
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 3 cut(s) 50, 84, 674
MspR9I CCNGG 2 cut(s) 84, 636
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 8 cut(s) 79, 107, 307, 372, 431, 571, 689, 722
NciI CCSGG 1 cut(s) 84
NdeII GATC 6 cut(s) 25, 231, 325, 499, 629, 786
NlaIII CATG 2 cut(s) 263, 358
NlaIV GGNNCC 2 cut(s) 40, 631
NmuCI GTSAC 2 cut(s) 103, 749
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 8 cut(s) 13, 18, 46, 337, 443, 670, 910, 954
PkrI GCNGC 5 cut(s) 112, 564, 567, 762, 939
PleI GAGTC 3 cut(s) 608, 717, 961
PpsI GAGTC 3 cut(s) 608, 717, 961
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 40, 631
PspPI GGNCC 1 cut(s) 816
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 2 cut(s) 499, 629
RsaI GTAC 3 cut(s) 332, 415, 640
RsaNI GTAC 3 cut(s) 331, 414, 639
SaqAI TTAA 6 cut(s) 378, 534, 608, 651, 666, 942
SatI GCNGC 5 cut(s) 111, 563, 566, 761, 938
Sau3AI GATC 6 cut(s) 25, 231, 325, 499, 629, 786
Sau96I GGNCC 1 cut(s) 816
SchI GAGTC 3 cut(s) 609, 718, 961
ScrFI CCNGG 2 cut(s) 84, 636
SduI GDGCHC 5 cut(s) 84, 148, 184, 368, 773
SfaNI GCATC 3 cut(s) 88, 559, 876
SfcI CTRYAG 2 cut(s) 299, 462
SinI GGWCC 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 4 cut(s) 150, 475, 545, 796
SsiI CCGC 2 cut(s) 108, 111
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 82, 634
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 438, 755, 974
TaiI ACGT 1 cut(s) 71
TaqI TCGA 3 cut(s) 11, 16, 324
TasI AATT 4 cut(s) 150, 475, 545, 796
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 8 cut(s) 13, 18, 46, 337, 443, 670, 910, 954
Tru1I TTAA 6 cut(s) 378, 534, 608, 651, 666, 942
Tru9I TTAA 6 cut(s) 378, 534, 608, 651, 666, 942
TscAI CASTG 5 cut(s) 40, 347, 441, 760, 955
TseFI GTSAC 2 cut(s) 103, 749
TseI GCWGC 4 cut(s) 562, 565, 760, 937
Tsp45I GTSAC 2 cut(s) 103, 749
TspDTI ATGAA 2 cut(s) 371, 908
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 5 cut(s) 40, 347, 441, 760, 955
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 816
XapI RAATTY 2 cut(s) 150, 796
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.