Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

15283042 .. 15285728

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12310.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGAAGCAATTCGGTTCTTTGAGCTCAACACCGGGGCCAAGATTCCGTCAGTCGGACTGGGCACGTGGCAGGCCGAGCCTGGGGTCGTCGCTGCCGCCGTCATCGCCGCCGTCAAGGTTGGATATCGGCATATTGATTGTGCTCAAGCTTATGGAAATGAAAAGGAGATTGGGTTTGCTCTGAAGAAGCTTTATGCTGATGGTGTAGTGAAGCGCGAGGACTTATGGATCACTTCAAAACTCTGGTGTAGCAATCATGCACCAGAAGATGTGCGGAAGGCAATAGATGGTACCCTGCAAGACTTACAACTCGACTATCTCGATCTGTATCTTATCCACTGGCCGGTCAAGATGAAGAAGGGTTCCGCTGGCTTTAAGCCTGAAAACCTTGACCAACCTGACATACCCAGTACTTGGAAAGCACTGGAGGCAGCATACGACTCTGGAAAGGCCAGGGCCATTGGAGTTAGCAATTTTTCTACCAAAAAGCTTGGGGACCTGTTGGCTGTGGCGCGCATCCCTCCCGCTGTTAATCAAGTGGAATGCCACCCTCAGTGGCAGCAGCCAAAGCTACATGAATTCTGTAAATCCAAGGGAGTCCACTTAAGTGGGTATTCACCATTGGGATCCCCAGGCACAAGTAGCATTAAGGGTGATGTCCTTAAGAATCCAATTCTATTATCGGTGGCAGAGAAGCTGGGCAAGACTCCTCCGCAAGTGGCTATCCGATGGGGGCTACAATCGGGTCACAGTGTACTGCCTAAGAGCACAAAGGAGGAAAGGATCAAGGAAAACTTTGATGTTTTTGATTGGTCTATTCCTGAGGACTTGCTTGCAAACTTTGCTGAAGTAAAGCAGGAAAGGTTAGTGAAAGGTACTGGATTTGTCAACAAGGAGCACGGTGCATACAAGACCATTGAGGAGCTCTGGGACGGAGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

316

Amino Acids

34.74

Weight (kDa)

7.09

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	2 cut(s)	219, 517
AciI	CCGC	7 cut(s)	5, 99, 111, 277, 369, 528, 716
AclWI	GGATC	4 cut(s)	239, 624, 637, 794
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	206, 870
AcvI	CACGTG	1 cut(s)	69
AfaI	GTAC	4 cut(s)	295, 415, 759, 880
AfiI	CCNNNNNNNGG	4 cut(s)	56, 84, 346, 417
AflII	CTTAAG	2 cut(s)	607, 665
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	3 cut(s)	82, 455, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	609
AluBI	AGCT	7 cut(s)	28, 152, 193, 493, 574, 700, 928
AluI	AGCT	7 cut(s)	28, 152, 193, 493, 574, 700, 928
Alw21I	GWGCWC	5 cut(s)	30, 148, 773, 903, 930
AlwI	GGATC	4 cut(s)	239, 624, 637, 794
AoxI	GGCC	5 cut(s)	39, 75, 344, 453, 459
ApeKI	GCWGC	4 cut(s)	95, 434, 562, 565
ApoI	RAATTY	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	293
AspLEI	GCGC	3 cut(s)	219, 517, 519
AspS9I	GGNCC	3 cut(s)	39, 459, 499
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	612, 668
AvaII	GGWCC	1 cut(s)	499
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	30, 930
BbrPI	CACGTG	1 cut(s)	69
Bbv12I	GWGCWC	5 cut(s)	30, 148, 773, 903, 930
BbvI	GCAGC	4 cut(s)	82, 446, 574, 577
BccI	CCATC	3 cut(s)	197, 284, 726
BceAI	ACGGC	2 cut(s)	86, 98
BciT130I	CCWGG	3 cut(s)	84, 457, 636
BcnI	CCSGG	1 cut(s)	37
BfrI	CTTAAG	2 cut(s)	607, 665
BisI	GCNGC	6 cut(s)	96, 99, 111, 435, 563, 566
BlsI	GCNGC	6 cut(s)	97, 100, 112, 436, 564, 567
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	4 cut(s)	37, 84, 457, 636
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	3 cut(s)	39, 459, 499
BmiI	GGNNCC	5 cut(s)	40, 295, 367, 500, 631
BmrFI	CCNGG	4 cut(s)	37, 84, 457, 636
BmrI	ACTGGG	2 cut(s)	71, 405
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	2 cut(s)	71, 405
BpmI	CTGGAG	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	36, 83, 456, 594, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 84, 346, 417
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	5 cut(s)	66, 347, 411, 432, 886
Bse21I	CCTNAGG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	3 cut(s)	84, 457, 636
BseDI	CCNNGG	5 cut(s)	36, 83, 456, 594, 634
BseGI	GGATG	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	56, 84, 346, 417
BseMII	CTCAG	2 cut(s)	569, 816
BseNI	ACTGG	5 cut(s)	66, 347, 411, 432, 886
BsePI	GCGCGC	1 cut(s)	515
BseRI	GAGGAG	2 cut(s)	702, 938
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	82, 446, 574, 577
BseYI	CCCAGC	1 cut(s)	700
Bsh1236I	CGCG	2 cut(s)	219, 517
BshFI	GGCC	5 cut(s)	41, 77, 346, 455, 461
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	5 cut(s)	30, 148, 773, 903, 930
BsiSI	CCGG	2 cut(s)	36, 347
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	4 cut(s)	56, 84, 346, 417
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	5 cut(s)	41, 77, 346, 455, 461
Bsp1286I	GDGCHC	6 cut(s)	30, 68, 148, 773, 903, 930
Bsp143I	GATC	4 cut(s)	231, 325, 629, 786
BspACI	CCGC	7 cut(s)	5, 99, 111, 277, 369, 528, 716
BspANI	GGCC	5 cut(s)	41, 77, 346, 455, 461
BspCNI	CTCAG	2 cut(s)	568, 817
BspFNI	CGCG	2 cut(s)	219, 517
BspLI	GGNNCC	5 cut(s)	40, 295, 367, 500, 631
BspPI	GGATC	4 cut(s)	239, 624, 637, 794
BspT107I	GGYRCC	1 cut(s)	293
BspTI	CTTAAG	2 cut(s)	607, 665
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	5 cut(s)	66, 347, 411, 432, 886
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	5 cut(s)	36, 83, 456, 594, 634
BssHII	GCGCGC	1 cut(s)	515
BssMI	GATC	4 cut(s)	231, 325, 629, 786
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	84, 457, 636
Bst4CI	ACNGT	3 cut(s)	755, 905, 945
BstAFI	CTTAAG	2 cut(s)	607, 665
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	69
BstC8I	GCNNGC	4 cut(s)	75, 373, 517, 837
BstDEI	CTNAG	3 cut(s)	555, 765, 825
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	219, 517
BstHHI	GCGC	3 cut(s)	219, 517, 519
BstKTI	GATC	4 cut(s)	234, 328, 632, 789
BstMBI	GATC	4 cut(s)	231, 325, 629, 786
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 107, 431, 571, 645, 845
BstNI	CCWGG	3 cut(s)	84, 457, 636
BstSCI	CCNGG	4 cut(s)	35, 82, 455, 634
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	2 cut(s)	219, 517
BstV1I	GCAGC	4 cut(s)	82, 446, 574, 577
BstX2I	RGATCY	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	5 cut(s)	41, 77, 346, 455, 461
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	340, 425, 563, 760
Cac8I	GCNNGC	4 cut(s)	75, 373, 517, 837
CfoI	GCGC	3 cut(s)	219, 517, 519
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	39, 459, 499
Csp6I	GTAC	4 cut(s)	294, 414, 758, 879
CviAII	CATG	2 cut(s)	260, 578
CviQI	GTAC	4 cut(s)	294, 414, 758, 879
DdeI	CTNAG	3 cut(s)	555, 765, 825
DpnI	GATC	4 cut(s)	233, 327, 631, 788
DpnII	GATC	4 cut(s)	231, 325, 629, 786
EaeI	YGGCCR	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	28, 928
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	30, 930
Eco32I	GATATC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	2 cut(s)	28, 928
Eco57I	CTGAAG	2 cut(s)	206, 870
Eco72I	CACGTG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	825
EcoICRI	GAGCTC	2 cut(s)	28, 928
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	82, 455, 634
EcoRV	GATATC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	30, 930
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	263, 581
FaiI	YATR	9 cut(s)	135, 156, 198, 229, 261, 407, 439, 579, 910
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	2 cut(s)	259, 577
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	96, 99, 111, 435, 563, 566
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	2 cut(s)	30, 930
Fsp4HI	GCNGC	6 cut(s)	96, 99, 111, 435, 563, 566
GlaI	GCGC	3 cut(s)	218, 516, 518
GluI	GCNGC	6 cut(s)	96, 99, 111, 435, 563, 566
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	5 cut(s)	41, 77, 346, 455, 461
HapII	CCGG	2 cut(s)	36, 347
HhaI	GCGC	3 cut(s)	219, 517, 519
Hin1II	CATG	2 cut(s)	263, 581
Hin6I	GCGC	3 cut(s)	217, 515, 517
HinP1I	GCGC	3 cut(s)	217, 515, 517
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	3 cut(s)	150, 191, 491
HinfI	GANTC	5 cut(s)	46, 443, 600, 670, 709
HpaII	CCGG	2 cut(s)	36, 347
HphI	GGTGA	2 cut(s)	612, 668
Hpy166II	GTNNAC	3 cut(s)	604, 758, 892
Hpy188I	TCNGA	3 cut(s)	59, 186, 731
Hpy188III	TCNNGA	4 cut(s)	323, 352, 447, 824
Hpy8I	GTNNAC	3 cut(s)	604, 758, 892
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	274, 355
HpyCH4III	ACNGT	3 cut(s)	755, 905, 945
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	4 cut(s)	263, 301, 839, 908
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 107, 431, 571, 645, 845
HpyF3I	CTNAG	3 cut(s)	555, 765, 825
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	263, 581
HspAI	GCGC	3 cut(s)	217, 515, 517
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	231, 325, 629, 786
LmnI	GCTCC	2 cut(s)	898, 925
Lsp1109I	GCAGC	4 cut(s)	82, 446, 574, 577
LweI	GCATC	1 cut(s)	528
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	4 cut(s)	233, 327, 631, 788
MboI	GATC	4 cut(s)	231, 325, 629, 786
MboII	GAAGA	3 cut(s)	199, 281, 370
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	6 cut(s)	30, 68, 148, 773, 903, 930
MluCI	AATT	4 cut(s)	12, 475, 581, 675
MlyI	GAGTC	3 cut(s)	437, 609, 703
MmeI	TCCRAC	2 cut(s)	37, 103
MnlI	CCTC	8 cut(s)	214, 424, 534, 564, 723, 772, 820, 916
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	5 cut(s)	378, 534, 608, 651, 666
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	371, 530
MspCI	CTTAAG	2 cut(s)	607, 665
MspI	CCGG	2 cut(s)	36, 347
MspR9I	CCNGG	4 cut(s)	37, 84, 457, 636
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	3 cut(s)	84, 457, 636
MvnI	CGCG	2 cut(s)	219, 517
MwoI	GCNNNNNNNGC	6 cut(s)	79, 107, 431, 571, 645, 845
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	231, 325, 629, 786
NlaIII	CATG	2 cut(s)	263, 581
NlaIV	GGNNCC	5 cut(s)	40, 295, 367, 500, 631
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	749
OliI	CACNNNNGTG	1 cut(s)	609
PauI	GCGCGC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 321
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	46, 670
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	6 cut(s)	97, 100, 112, 436, 564, 567
PleI	GAGTC	3 cut(s)	437, 608, 703
PmaCI	CACGTG	1 cut(s)	69
PmlI	CACGTG	1 cut(s)	69
PpsI	GAGTC	3 cut(s)	437, 608, 703
Ppu21I	YACGTR	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	499
Psp124BI	GAGCTC	2 cut(s)	30, 930
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	3 cut(s)	82, 455, 634
PspCI	CACGTG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	3 cut(s)	82, 455, 634
PspN4I	GGNNCC	5 cut(s)	40, 295, 367, 500, 631
PspPI	GGNCC	3 cut(s)	39, 459, 499
PspPPI	RGGWCCY	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	629
PteI	GCGCGC	1 cut(s)	515
RsaI	GTAC	4 cut(s)	295, 415, 759, 880
RsaNI	GTAC	4 cut(s)	294, 414, 758, 879
RseI	CAYNNNNRTG	1 cut(s)	609
SacI	GAGCTC	2 cut(s)	30, 930
SaqAI	TTAA	5 cut(s)	378, 534, 608, 651, 666
SatI	GCNGC	6 cut(s)	96, 99, 111, 435, 563, 566
Sau3AI	GATC	4 cut(s)	231, 325, 629, 786
Sau96I	GGNCC	3 cut(s)	39, 459, 499
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	3 cut(s)	437, 609, 703
ScrFI	CCNGG	4 cut(s)	37, 84, 457, 636
SduI	GDGCHC	6 cut(s)	30, 68, 148, 773, 903, 930
SfaNI	GCATC	1 cut(s)	528
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	3 cut(s)	147, 607, 665
SmoI	CTYRAG	3 cut(s)	147, 607, 665
Sse9I	AATT	4 cut(s)	12, 475, 581, 675
SsiI	CCGC	7 cut(s)	5, 99, 111, 277, 369, 528, 716
SstI	GAGCTC	2 cut(s)	30, 930
StyD4I	CCNGG	4 cut(s)	35, 82, 455, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	755, 905, 945
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	315, 324
TasI	AATT	4 cut(s)	12, 475, 581, 675
TatI	WGTACW	2 cut(s)	413, 757
TauI	GCSGC	2 cut(s)	101, 113
TfiI	GAWTC	2 cut(s)	46, 670
Tru1I	TTAA	5 cut(s)	378, 534, 608, 651, 666
Tru9I	TTAA	5 cut(s)	378, 534, 608, 651, 666
TscAI	CASTG	4 cut(s)	347, 432, 563, 760
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	4 cut(s)	95, 434, 562, 565
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	3 cut(s)	177, 371, 594
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	347, 432, 563, 760
Van91I	CCANNNNNTGG	1 cut(s)	417
Vha464I	CTTAAG	2 cut(s)	607, 665
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.