Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

11162644 .. 11164616

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCGAACCCAAGTCACTTTTTTGTGCTGAACACAGGCGCCAAGATACCTTCGGTCGGCTTAGGAACATTCCGGACGGAACCTGATCTCACTGTCGACCTCTTCACCACTGCCATTAAGGTTGGGTATCGTCATATTGATTGTGCTCAAGTGTATGGCAACGAGAAGGAGATTGGTGATGCTCTGAAGAAGCTGTGTGATGAGGGGATGGTGAAGCGCGAGGATTTATGGATCACTTCCAAACTCTGGTGTGCTGATCACGAACCAGAAGATGTGCCAAAAGCATTTAATAAGACTTTGCAAGACTTGCAACTTGACTATCTGGATCTTTACCTTATCCATTGGCCAGTCAGCATGAAAAATGGAAAGCTTACTCAACCTAATATACCTGCTACTTGGAAAGCAATGGAGGCACTCTATGATTCAGGCAAGGCAAGGGCTATTGGAGTCAGCAATTTCTCTTCAAAGAAGCTCGGGGATCTCTTAGAGGTGGCACGGATACCTCCTGCTGTTAATCAAGTGGAGTTGCACCCTCAGTGGCAGCAACCTAAGCTACATGCTTTCTGTCAATCTAAGGGAGTTCACTTAACTGCATATTCGCCATTGGTAAAGAACAAGATCCTTGAGCATTCTATTGTGAAAATCGTGGCAGAAGAATTGGGAAAGACTCCTGCTCAAGTTGTTCTTCGGTGGGGCTTGCAAATGGGTCACAGTCTAGTGCCTAAAAGCTCAAATAAGACCAGGATTCAGGAAAATTTTGATCTTTTTGATTGGTCTATACCTGAACACTTGCTTGCCAAGTTTTCTGAAATTAAGCAGGAGAAGCTTATTCAAGCTACTCATTTTGTGCATGAGACTCTTGGTCCATATAAGACCCTTGAAGAACTCTGGGATGAACAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

301

Amino Acids

34.15

Weight (kDa)

6.46

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	21 - 270	2.6e-50	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	72
AclWI	GGATC	4 cut(s)	239, 333, 486, 613
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AgsI	TTSAA	3 cut(s)	465, 833, 881
AhdI	GACNNNNNGTC	1 cut(s)	861
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	7 cut(s)	193, 370, 472, 553, 729, 826, 836
AluI	AGCT	7 cut(s)	193, 370, 472, 553, 729, 826, 836
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	4 cut(s)	239, 333, 486, 613
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	754
AspLEI	GCGC	2 cut(s)	41, 219
AspS9I	GGNCC	1 cut(s)	863
AsuHPI	GGTGA	3 cut(s)	97, 188, 223
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	742
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	863
BmeRI	GACNNNNNGTC	1 cut(s)	861
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	40, 81
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	2 cut(s)	61, 549
BpuEI	CTTGAG	3 cut(s)	132, 644, 660
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	742
BseGI	GGATG	2 cut(s)	213, 898
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	40, 81
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	4 cut(s)	239, 333, 486, 613
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	94, 713, 900
Bst6I	CTCTTC	2 cut(s)	107, 466
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	698, 795
BstDEI	CTNAG	5 cut(s)	61, 484, 534, 549, 573
BstF5I	GGATG	2 cut(s)	213, 898
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 219
BstKTI	GATC	7 cut(s)	88, 234, 259, 328, 481, 621, 763
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	740
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	3 cut(s)	325, 478, 618
BstYI	RGATCY	3 cut(s)	325, 478, 618
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	213, 898
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	90, 108, 542
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	698, 795
CfoI	GCGC	2 cut(s)	41, 219
Cfr13I	GGNCC	1 cut(s)	863
CviAII	CATG	3 cut(s)	355, 557, 851
DdeI	CTNAG	5 cut(s)	61, 484, 534, 549, 573
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	87, 233, 258, 327, 480, 620, 762
DpnII	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
DriI	GACNNNNNGTC	1 cut(s)	861
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	107, 466
Eam1105I	GACNNNNNGTC	1 cut(s)	861
EarI	CTCTTC	2 cut(s)	107, 466
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	740
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	358, 560, 854
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	3 cut(s)	354, 556, 850
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	40, 218
GluI	GCNGC	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	2 cut(s)	41, 219
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	358, 560, 854
Hin6I	GCGC	2 cut(s)	39, 217
HinP1I	GCGC	2 cut(s)	39, 217
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	368, 824
HinfI	GANTC	5 cut(s)	422, 447, 667, 745, 856
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	97, 188, 223
Hpy166II	GTNNAC	2 cut(s)	97, 583
Hpy188I	TCNGA	2 cut(s)	186, 808
Hpy188III	TCNNGA	4 cut(s)	73, 260, 323, 749
Hpy8I	GTNNAC	2 cut(s)	97, 583
HpyAV	CCTTC	2 cut(s)	60, 160
HpyCH4III	ACNGT	3 cut(s)	94, 713, 900
HpyCH4V	TGCA	6 cut(s)	301, 310, 529, 593, 700, 850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
HpyF3I	CTNAG	5 cut(s)	61, 484, 534, 549, 573
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	358, 560, 854
HspAI	GCGC	2 cut(s)	39, 217
KasI	GGCGCC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	716
MaeIII	GTNAC	2 cut(s)	14, 707
MalI	GATC	7 cut(s)	87, 233, 258, 327, 480, 620, 762
MboI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
MboII	GAAGA	7 cut(s)	94, 199, 281, 453, 665, 677, 893
MflI	RGATCY	3 cut(s)	325, 478, 618
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	4 cut(s)	454, 656, 754, 810
MluNI	TGGCCA	1 cut(s)	346
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	456, 661, 850
MnlI	CCTC	7 cut(s)	110, 196, 214, 403, 481, 513, 543
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	5 cut(s)	117, 288, 513, 587, 813
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	307, 410, 550, 823
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
NlaIII	CATG	3 cut(s)	358, 560, 854
NlaIV	GGNNCC	2 cut(s)	40, 81
NmuCI	GTSAC	2 cut(s)	14, 707
NspI	RCATGY	1 cut(s)	560
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	422, 745
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	3 cut(s)	455, 661, 850
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	455, 661, 850
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	40, 81
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	325, 478, 618
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	117, 288, 513, 587, 813
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	7 cut(s)	85, 231, 256, 325, 478, 618, 760
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	3 cut(s)	456, 661, 850
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	863
SmlI	CTYRAG	3 cut(s)	147, 623, 675
SmoI	CTYRAG	3 cut(s)	147, 623, 675
Sse9I	AATT	4 cut(s)	454, 656, 754, 810
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	94, 713, 900
TaqI	TCGA	2 cut(s)	5, 96
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	4 cut(s)	454, 656, 754, 810
TfiI	GAWTC	2 cut(s)	422, 745
Tru1I	TTAA	5 cut(s)	117, 288, 513, 587, 813
Tru9I	TTAA	5 cut(s)	117, 288, 513, 587, 813
TscAI	CASTG	3 cut(s)	97, 115, 542
TseFI	GTSAC	2 cut(s)	14, 707
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	14, 707
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	92, 511
TspRI	CASTG	3 cut(s)	97, 115, 542
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.