Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Forward (+)

25190199 .. 25192346

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGAAAGCGATTCGGTTCTTTGAGTTGAACACTGGGGCCAAGATCCCGTCCCTCGGTTTGGGCACGTGGCAGGCTGAGCCCGGCGTCGTTGCCGCCGCCGTCACCACCGCCATTAAGGTCGGGTACCGGCATATTGATTGTGCTCAAGCGTATGGCAATGAAAAGGAGATTGGGTTTGCTCTGAAGAAGCTTTATGATGATGGTGTGGTGAAGCGTGAGGACCTATGGATCACTTCAAAACTCTGGTGCAATAATCATGAACCAGAAGATGTGCCAAAAGCACTAGATAGTACCCTGCAAGACTTACAACTCGACTATCTCGATCTCTATCTAATCCACTGGCCTGTCAAGATGAAGAAGGGTTCAACTGGCTTTAAGACTGAAAACCTTGCCCGACCTGACATAGCCAGTACTTGGAAAGCAATGGAGGCACTTTATGATTCTCGCAAGGCCAGGGCCATAGGGGTTAGCAATTTTTCTACAAAGAAGCTTGGAGACCTATTAACAGTGGCACGAGTGCCTCCGGCTGTTAATCAAGTGGAATTGCACCCTCAATGGCAGCAGCCAAAGCTAAAAGAATTCTGCAAATCCAAGGGAGTTCACTTAACCGGGTATTCACCATTGGGATCCCCAGGCACAAGCAGCATTAAGGGTGATGTGCTTAAGAATCCGATTCTTACATCGGTGGCAGAGAAGCTGGGCAAGACTCCTGCACAAGTGGCTATCCGGTGGGGGCTCCAGTCAGGTCACAGTGTACTGCCTAAGAGCACAAAGGAGGCAAGGATCAAGGAGAACTTCGATGTTTTTGATTGGTCTATACCTGAAGATTTGTTTGCAAAGTTTGCTGAAGCAAAGCAGGAGAGGCTGCTTAAAGGTACCGGATTCGTCCACGAGACTTCCGAAGGTTACAAGACCATCGAGGAACTTTGGGACGGCGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

316

Amino Acids

35.01

Weight (kDa)

8.52

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	126, 878
AccB1I	GGYRCC	2 cut(s)	126, 878
AccB7I	CCANNNNNTGG	1 cut(s)	417
AciI	CCGC	3 cut(s)	96, 99, 111
AclWI	GGATC	5 cut(s)	40, 239, 624, 637, 794
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	3 cut(s)	206, 846, 870
AcvI	CACGTG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	5 cut(s)	128, 295, 415, 759, 880
AfiI	CCNNNNNNNGG	3 cut(s)	56, 61, 417
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	31, 240, 369
AjnI	CCWGG	2 cut(s)	455, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	4 cut(s)	193, 493, 574, 700
AluI	AGCT	4 cut(s)	193, 493, 574, 700
Alw21I	GWGCWC	2 cut(s)	148, 773
Alw26I	GTCTC	2 cut(s)	492, 890
AlwI	GGATC	5 cut(s)	40, 239, 624, 637, 794
AoxI	GGCC	4 cut(s)	39, 344, 453, 459
ApeKI	GCWGC	4 cut(s)	562, 565, 645, 868
ApoI	RAATTY	1 cut(s)	581
Asp718I	GGTACC	2 cut(s)	126, 878
AspS9I	GGNCC	3 cut(s)	39, 223, 459
AsuC2I	CCSGG	2 cut(s)	84, 613
AsuHPI	GGTGA	4 cut(s)	97, 223, 612, 668
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	126, 878
BanII	GRGCYC	2 cut(s)	84, 741
BauI	CACGAG	2 cut(s)	516, 893
BbrPI	CACGTG	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	148, 773
BbvI	GCAGC	4 cut(s)	574, 577, 657, 855
BccI	CCATC	2 cut(s)	197, 926
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	457, 636
BcnI	CCSGG	2 cut(s)	84, 613
BcoDI	GTCTC	2 cut(s)	492, 890
BfaI	CTAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	6 cut(s)	96, 99, 563, 566, 646, 869
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	6 cut(s)	97, 100, 564, 567, 647, 870
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	4 cut(s)	84, 457, 613, 636
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	39, 223, 459
BmiI	GGNNCC	5 cut(s)	40, 128, 631, 740, 880
BmrFI	CCNGG	4 cut(s)	84, 457, 613, 636
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	2 cut(s)	84, 613
BsaAI	YACGTR	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	55, 456, 594, 634
BsaWI	WCCGGW	2 cut(s)	729, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 61, 417
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	5 cut(s)	40, 347, 376, 411, 742
Bse3DI	GCAATG	2 cut(s)	166, 432
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	457, 636
BseDI	CCNNGG	4 cut(s)	55, 456, 594, 634
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	3 cut(s)	56, 61, 417
BseMI	GCAATG	2 cut(s)	166, 432
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	5 cut(s)	40, 347, 376, 411, 742
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	574, 577, 657, 855
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	4 cut(s)	41, 346, 455, 461
BshNI	GGYRCC	2 cut(s)	126, 878
BsiHKAI	GWGCWC	2 cut(s)	148, 773
BsiSI	CCGG	6 cut(s)	84, 130, 527, 612, 730, 882
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	56, 61, 417
BsmAI	GTCTC	2 cut(s)	492, 890
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	41, 346, 455, 461
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	5 cut(s)	68, 84, 148, 741, 773
Bsp143I	GATC	5 cut(s)	45, 231, 325, 629, 786
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	96, 99, 111
BspANI	GGCC	4 cut(s)	41, 346, 455, 461
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	5 cut(s)	40, 128, 631, 740, 880
BspPI	GGATC	5 cut(s)	40, 239, 624, 637, 794
BspT107I	GGYRCC	2 cut(s)	126, 878
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	166, 432
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	5 cut(s)	40, 347, 376, 411, 742
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	4 cut(s)	55, 456, 594, 634
BssMI	GATC	5 cut(s)	45, 231, 325, 629, 786
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	2 cut(s)	516, 893
BssT1I	CCWWGG	1 cut(s)	594
Bst2BI	CACGAG	2 cut(s)	516, 893
Bst2UI	CCWGG	2 cut(s)	457, 636
Bst4CI	ACNGT	2 cut(s)	511, 755
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	78, 765
BstKTI	GATC	5 cut(s)	48, 234, 328, 632, 789
BstMAI	GTCTC	2 cut(s)	492, 890
BstMBI	GATC	5 cut(s)	45, 231, 325, 629, 786
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 431, 571, 645, 722, 845, 865
BstNI	CCWGG	2 cut(s)	457, 636
BstSCI	CCNGG	4 cut(s)	82, 455, 611, 634
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	4 cut(s)	574, 577, 657, 855
BstX2I	RGATCY	2 cut(s)	45, 629
BstYI	RGATCY	2 cut(s)	45, 629
BsuRI	GGCC	4 cut(s)	41, 346, 455, 461
BtsIMutI	CAGTG	4 cut(s)	33, 340, 516, 760
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	39, 223, 459
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	5 cut(s)	127, 294, 414, 758, 879
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	5 cut(s)	127, 294, 414, 758, 879
DdeI	CTNAG	2 cut(s)	78, 765
DpnI	GATC	5 cut(s)	47, 233, 327, 631, 788
DpnII	GATC	5 cut(s)	45, 231, 325, 629, 786
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	84, 741
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	206, 846, 870
Eco72I	CACGTG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	455, 634
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	84, 741
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	1 cut(s)	263
FaiI	YATR	9 cut(s)	135, 156, 198, 229, 261, 407, 441, 464, 821
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	96, 99, 563, 566, 646, 869
FriOI	GRGCYC	2 cut(s)	84, 741
Fsp4HI	GCNGC	6 cut(s)	96, 99, 563, 566, 646, 869
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	6 cut(s)	96, 99, 563, 566, 646, 869
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	1 cut(s)	725
HaeIII	GGCC	4 cut(s)	41, 346, 455, 461
HapII	CCGG	6 cut(s)	84, 130, 527, 612, 730, 882
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	263
HindIII	AAGCTT	2 cut(s)	191, 491
HinfI	GANTC	6 cut(s)	13, 443, 670, 676, 709, 885
HpaII	CCGG	6 cut(s)	84, 130, 527, 612, 730, 882
HphI	GGTGA	4 cut(s)	97, 223, 612, 668
Hpy166II	GTNNAC	3 cut(s)	604, 758, 892
Hpy188I	TCNGA	3 cut(s)	186, 675, 904
Hpy188III	TCNNGA	3 cut(s)	260, 323, 352
Hpy8I	GTNNAC	3 cut(s)	604, 758, 892
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	355, 899
HpyCH4III	ACNGT	2 cut(s)	511, 755
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	252, 301, 550, 588, 716, 839
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 431, 571, 645, 722, 845, 865
HpyF3I	CTNAG	2 cut(s)	78, 765
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	263
KpnI	GGTACC	2 cut(s)	130, 882
Kzo9I	GATC	5 cut(s)	45, 231, 325, 629, 786
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	4 cut(s)	574, 577, 657, 855
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	3 cut(s)	103, 749, 908
MalI	GATC	5 cut(s)	47, 233, 327, 631, 788
MboI	GATC	5 cut(s)	45, 231, 325, 629, 786
MboII	GAAGA	4 cut(s)	199, 281, 370, 839
MflI	RGATCY	2 cut(s)	45, 629
MhlI	GDGCHC	5 cut(s)	68, 84, 148, 741, 773
MluCI	AATT	4 cut(s)	475, 545, 581, 941
MlyI	GAGTC	1 cut(s)	703
MnlI	CCTC	8 cut(s)	65, 214, 424, 534, 564, 772, 858, 916
MseI	TTAA	8 cut(s)	117, 378, 506, 534, 608, 651, 666, 873
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	6 cut(s)	84, 130, 527, 612, 730, 882
MspR9I	CCNGG	4 cut(s)	84, 457, 613, 636
MvaI	CCWGG	2 cut(s)	457, 636
MwoI	GCNNNNNNNGC	7 cut(s)	79, 431, 571, 645, 722, 845, 865
NciI	CCSGG	2 cut(s)	84, 613
NdeII	GATC	5 cut(s)	45, 231, 325, 629, 786
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	5 cut(s)	40, 128, 631, 740, 880
NmuCI	GTSAC	2 cut(s)	103, 749
PagI	TCATGA	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 900
PfeI	GAWTC	5 cut(s)	13, 443, 670, 676, 885
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	6 cut(s)	97, 100, 564, 567, 647, 870
PleI	GAGTC	1 cut(s)	703
PmaCI	CACGTG	1 cut(s)	69
PmlI	CACGTG	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	455, 634
PspCI	CACGTG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	2 cut(s)	455, 634
PspN4I	GGNNCC	5 cut(s)	40, 128, 631, 740, 880
PspPI	GGNCC	3 cut(s)	39, 223, 459
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	45, 629
RsaI	GTAC	5 cut(s)	128, 295, 415, 759, 880
RsaNI	GTAC	5 cut(s)	127, 294, 414, 758, 879
SaqAI	TTAA	8 cut(s)	117, 378, 506, 534, 608, 651, 666, 873
SatI	GCNGC	6 cut(s)	96, 99, 563, 566, 646, 869
Sau3AI	GATC	5 cut(s)	45, 231, 325, 629, 786
Sau96I	GGNCC	3 cut(s)	39, 223, 459
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	4 cut(s)	84, 457, 613, 636
SduI	GDGCHC	5 cut(s)	68, 84, 148, 741, 773
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	147, 665
SmoI	CTYRAG	2 cut(s)	147, 665
Sse9I	AATT	4 cut(s)	475, 545, 581, 941
SsiI	CCGC	3 cut(s)	96, 99, 111
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	4 cut(s)	82, 455, 611, 634
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	511, 755
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	4 cut(s)	315, 324, 801, 921
TasI	AATT	4 cut(s)	475, 545, 581, 941
TatI	WGTACW	2 cut(s)	413, 757
TauI	GCSGC	2 cut(s)	98, 101
TfiI	GAWTC	5 cut(s)	13, 443, 670, 676, 885
Tru1I	TTAA	8 cut(s)	117, 378, 506, 534, 608, 651, 666, 873
Tru9I	TTAA	8 cut(s)	117, 378, 506, 534, 608, 651, 666, 873
TscAI	CASTG	4 cut(s)	40, 347, 516, 760
TseFI	GTSAC	2 cut(s)	103, 749
TseI	GCWGC	4 cut(s)	562, 565, 645, 868
Tsp45I	GTSAC	2 cut(s)	103, 749
TspDTI	ATGAA	3 cut(s)	177, 276, 371
TspRI	CASTG	4 cut(s)	40, 347, 516, 760
Van91I	CCANNNNNTGG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	581
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.