Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005190.1

Orthogroup ID

OG0002704

Physical Location & Seq

Genomic Coordinates Reverse (-)

22058 .. 24237

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005190.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggcgaatgcgattcgattctttgagctgaacaccggagcgaagattccggccgtcggtttggggacgtggcaggccgagcccggcgtcgttggcgatgccgtcaccgccgccatcaaggttgggtataggcatattgattgtgctcaaatttatggaaacgaaaaagagattggttgtgctctgaagaagctatatgatgatggtgtagtgaagcgtgaggacttgtggatcacttcaaaactctggtgtagtaatcatgcaccagaagatgtgccaaaggcactagatggcaccctgcaggacttgcaaagtgactatctcgatctgtacctgattcactggccagtcagcatgaaaaagggctcaacaggctttaaacctgaaaacttttctcaacccgacctaccaagtacttggaaagcaatggaagcactgtatgattctggcaaggccaaggctataggagttagcaatttttccacaaaaaaacttggagatctgttatcggtggcacgcatacctcctgctgttaaccaagtggaattgcacccccaatggcagcagccaaagctaaaagcattctgccaatctaagggagtccacttaactgggtattcgccattgggatccccgggtacaagtagtattaagggtgatgtccttaagaatccggttcttgcattggtagcagagaagctgggcaagactcctgcacaagtggctctccgttgggggctacagtcgggtcacagtgtgctgcctaagagcacaaaggaggcgaggatcaaggagaattttgatgtttttgattggtccatacctgaggacttggagaggctgcttaaaggcactggattcgtcaatgagactcacggtttctacaagaacattgaggaactttgggatggagaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

306

Amino Acids

33.66

Weight (kDa)

6.67

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13021 FvH4_6g13030
malus_domestica	MD00G1141700.v1.1 MD12G1149800.v1.1 MD12G1150000.v1.1
prunus_persica	Prupe.6G261600_v2.0.a1 Prupe.6G261700_v2.0.a1
pyrus_communis	pycom04g12310 pycom12g14360 pycom12g14370 pycom12g14380
rosa_chinensis	RchiOBHm_Chr3g0465241 RchiOBHm_Chr3g0465281 RchiOBHm_Chr3g0465291 RchiOBHm_Chr3g0465301
rosa_multiflora	Rmu_co8361281.1_g000001 Rmu_sc0005190.1_g000002 Rmu_sc0005190.1_g000003 Rmu_sc0005190.1_g000004 Rmu_sc0005190.1_g000005 Rmu_sc0015811.1_g000003 Rmu_sc0029050.1_g000001 Rmu_sc0029051.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415140 Rroxscaffold_6G00415150 Rroxscaffold_6G00415180
rosa_rugosa	Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG140300 Rh3BG140600 Rh3BG140700 Rh3BG140800 Rh3DG141700 Rh3DG141800 Rh3DG141900
rosa_wichuraiana	Rw3G011480 Rw3G011500 Rw3G011510 Rw3G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	2 cut(s)	108, 111
AclWI	GGATC	4 cut(s)	239, 624, 637, 794
AcoI	YGGCCR	2 cut(s)	51, 344
AcsI	RAATTY	2 cut(s)	150, 796
AcuI	CTGAAG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	757
AfaI	GTAC	3 cut(s)	332, 415, 640
AfiI	CCNNNNNNNGG	2 cut(s)	56, 595
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	1 cut(s)	240
AjiI	CACGTC	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	4 cut(s)	28, 193, 574, 700
AluI	AGCT	4 cut(s)	28, 193, 574, 700
Alw21I	GWGCWC	3 cut(s)	148, 184, 773
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	4 cut(s)	239, 624, 637, 794
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	4 cut(s)	51, 75, 344, 453
ApeKI	GCWGC	4 cut(s)	562, 565, 760, 841
ApoI	RAATTY	2 cut(s)	150, 796
AspS9I	GGNCC	1 cut(s)	816
AsuC2I	CCSGG	3 cut(s)	84, 635, 636
AsuHPI	GGTGA	2 cut(s)	97, 668
AvaI	CYCGRG	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	816
AxyI	CCTNAGG	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	84, 368
Bbv12I	GWGCWC	3 cut(s)	148, 184, 773
BbvI	GCAGC	4 cut(s)	574, 577, 747, 828
BccI	CCATC	4 cut(s)	122, 197, 284, 902
BceAI	ACGGC	2 cut(s)	38, 86
BcgI	CGANNNNNNTGC	2 cut(s)	841, 875
BcnI	CCSGG	3 cut(s)	84, 635, 636
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	3 cut(s)	299, 462, 740
BfrI	CTTAAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	5 cut(s)	111, 563, 566, 761, 842
BlsI	GCNGC	5 cut(s)	112, 564, 567, 762, 843
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	84, 635, 636
Bme18I	GGWCC	1 cut(s)	816
BmeT110I	CYCGRG	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	2 cut(s)	295, 631
BmrFI	CCNGG	3 cut(s)	84, 635, 636
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	621
BpuMI	CCSGG	3 cut(s)	84, 635, 636
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	456, 633, 634
BsaWI	WCCGGW	2 cut(s)	35, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 595
Bse1I	ACTGG	4 cut(s)	347, 347, 616, 859
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	456, 633, 634
BseGI	GGATG	1 cut(s)	913
BseLI	CCNNNNNNNGG	2 cut(s)	56, 595
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	4 cut(s)	347, 347, 616, 859
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	574, 577, 747, 828
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	53, 77, 346, 455
BshNI	GGYRCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	3 cut(s)	148, 184, 773
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	5 cut(s)	36, 50, 84, 635, 674
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	56, 595
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	13, 581
BsnI	GGCC	4 cut(s)	53, 77, 346, 455
BsoBI	CYCGRG	1 cut(s)	634
Bsp1286I	GDGCHC	5 cut(s)	84, 148, 184, 368, 773
Bsp143I	GATC	5 cut(s)	231, 325, 499, 629, 786
BspACI	CCGC	2 cut(s)	108, 111
BspANI	GGCC	4 cut(s)	53, 77, 346, 455
BspCNI	CTCAG	1 cut(s)	817
BspLI	GGNNCC	2 cut(s)	295, 631
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	4 cut(s)	239, 624, 637, 794
BspT107I	GGYRCC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	4 cut(s)	347, 347, 616, 859
BssECI	CCNNGG	3 cut(s)	456, 633, 634
BssMI	GATC	5 cut(s)	231, 325, 499, 629, 786
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	438, 744, 755, 878
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	75, 517
BstDEI	CTNAG	3 cut(s)	594, 765, 825
BstF5I	GGATG	1 cut(s)	913
BstKTI	GATC	5 cut(s)	234, 328, 502, 632, 789
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	5 cut(s)	231, 325, 499, 629, 786
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	9 cut(s)	79, 93, 107, 307, 372, 431, 571, 689, 722
BstSCI	CCNGG	3 cut(s)	82, 633, 634
BstSFI	CTRYAG	3 cut(s)	299, 462, 740
BstV1I	GCAGC	4 cut(s)	574, 577, 747, 828
BstX2I	RGATCY	2 cut(s)	499, 629
BstXI	CCANNNNNNTGG	2 cut(s)	417, 611
BstYI	RGATCY	2 cut(s)	499, 629
BstZI	CGGCCG	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	4 cut(s)	53, 77, 346, 455
BtgZI	GCGATG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	913
BtsIMutI	CAGTG	4 cut(s)	340, 434, 760, 852
Cac8I	GCNNGC	2 cut(s)	75, 517
Cfr13I	GGNCC	1 cut(s)	816
Cfr9I	CCCGGG	1 cut(s)	634
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	331, 414, 639
CviAII	CATG	2 cut(s)	260, 355
CviQI	GTAC	3 cut(s)	331, 414, 639
DdeI	CTNAG	3 cut(s)	594, 765, 825
DpnI	GATC	5 cut(s)	233, 327, 501, 631, 788
DpnII	GATC	5 cut(s)	231, 325, 499, 629, 786
DraI	TTTAAA	1 cut(s)	379
DraIII	CACNNNGTG	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	51, 344
EagI	CGGCCG	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	84, 368
Eco47I	GGWCC	1 cut(s)	816
Eco52I	CGGCCG	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	84, 368
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	263, 358
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	259, 354
Fnu4HI	GCNGC	5 cut(s)	111, 563, 566, 761, 842
FriOI	GRGCYC	2 cut(s)	84, 368
Fsp4HI	GCNGC	5 cut(s)	111, 563, 566, 761, 842
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	5 cut(s)	111, 563, 566, 761, 842
GsaI	CCCAGC	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	53, 77, 346, 455
HapII	CCGG	5 cut(s)	36, 50, 84, 635, 674
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	263, 358
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	5 cut(s)	36, 50, 84, 635, 674
HphI	GGTGA	2 cut(s)	97, 668
Hpy166II	GTNNAC	2 cut(s)	535, 604
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	2 cut(s)	535, 604
Hpy99I	CGWCG	2 cut(s)	59, 92
HpyCH4III	ACNGT	4 cut(s)	438, 744, 755, 878
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	263, 301, 310, 550, 683, 716
HpyF10VI	GCNNNNNNNGC	9 cut(s)	79, 93, 107, 307, 372, 431, 571, 689, 722
HpyF3I	CTNAG	3 cut(s)	594, 765, 825
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	263, 358
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	231, 325, 499, 629, 786
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	4 cut(s)	574, 577, 747, 828
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	3 cut(s)	103, 314, 749
MalI	GATC	5 cut(s)	233, 327, 501, 631, 788
MboI	GATC	5 cut(s)	231, 325, 499, 629, 786
MboII	GAAGA	3 cut(s)	55, 199, 281
MflI	RGATCY	2 cut(s)	499, 629
MhlI	GDGCHC	5 cut(s)	84, 148, 184, 368, 773
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	5 cut(s)	150, 475, 545, 796, 914
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	3 cut(s)	609, 703, 865
MnlI	CCTC	7 cut(s)	214, 534, 772, 777, 820, 831, 889
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	6 cut(s)	378, 534, 608, 651, 666, 846
Msp20I	TGGCCA	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	5 cut(s)	36, 50, 84, 635, 674
MspR9I	CCNGG	3 cut(s)	84, 635, 636
Mva1269I	GAATGC	2 cut(s)	13, 581
MwoI	GCNNNNNNNGC	9 cut(s)	79, 93, 107, 307, 372, 431, 571, 689, 722
NciI	CCSGG	3 cut(s)	84, 635, 636
NdeII	GATC	5 cut(s)	231, 325, 499, 629, 786
NlaIII	CATG	2 cut(s)	263, 358
NlaIV	GGNNCC	2 cut(s)	295, 631
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	3 cut(s)	103, 314, 749
PctI	GAATGC	2 cut(s)	13, 581
PfeI	GAWTC	7 cut(s)	13, 18, 46, 337, 443, 670, 858
PkrI	GCNGC	5 cut(s)	112, 564, 567, 762, 843
PleI	GAGTC	3 cut(s)	608, 703, 865
PpsI	GAGTC	3 cut(s)	608, 703, 865
PspFI	CCCAGC	1 cut(s)	700
PspN4I	GGNNCC	2 cut(s)	295, 631
PspPI	GGNCC	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	303
PsuI	RGATCY	2 cut(s)	499, 629
RsaI	GTAC	3 cut(s)	332, 415, 640
RsaNI	GTAC	3 cut(s)	331, 414, 639
SaqAI	TTAA	6 cut(s)	378, 534, 608, 651, 666, 846
SatI	GCNGC	5 cut(s)	111, 563, 566, 761, 842
Sau3AI	GATC	5 cut(s)	231, 325, 499, 629, 786
Sau96I	GGNCC	1 cut(s)	816
SbfI	CCTGCAGG	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	3 cut(s)	609, 703, 865
ScrFI	CCNGG	3 cut(s)	84, 635, 636
SdaI	CCTGCAGG	1 cut(s)	303
SduI	GDGCHC	5 cut(s)	84, 148, 184, 368, 773
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	3 cut(s)	299, 462, 740
SinI	GGWCC	1 cut(s)	816
SmaI	CCCGGG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse8387I	CCTGCAGG	1 cut(s)	303
Sse9I	AATT	5 cut(s)	150, 475, 545, 796, 914
SsiI	CCGC	2 cut(s)	108, 111
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	82, 633, 634
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	4 cut(s)	438, 744, 755, 878
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	16, 324
TasI	AATT	5 cut(s)	150, 475, 545, 796, 914
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	7 cut(s)	13, 18, 46, 337, 443, 670, 858
Tru1I	TTAA	6 cut(s)	378, 534, 608, 651, 666, 846
Tru9I	TTAA	6 cut(s)	378, 534, 608, 651, 666, 846
TscAI	CASTG	4 cut(s)	347, 441, 760, 859
TseFI	GTSAC	3 cut(s)	103, 314, 749
TseI	GCWGC	4 cut(s)	562, 565, 760, 841
Tsp45I	GTSAC	3 cut(s)	103, 314, 749
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	719
TspMI	CCCGGG	1 cut(s)	634
TspRI	CASTG	4 cut(s)	347, 441, 760, 859
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	816
XapI	RAATTY	2 cut(s)	150, 796
XmaI	CCCGGG	1 cut(s)	634
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.