FvH4_6g17371

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002155
Physical Location & Seq
Reverse (-)
11286044 .. 11286721
678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17371.t1

Sequence Viewer

Length: 678 bp
ATGGACTTTCGTCCTATGTCCGACGAAAACGATTCTCCCGAGGATCGTCGGCTAAACCGAATTGCTCTCATGTCCCTCGTCCTCCTAATCTCCGGATGTTTCCTCACGCTGACCCTAATAGACGTCGTCATCGATCAAGTCCTCGGTACTGAATACCCCGTCTTCCAGCTCGAATCCGCCGCCTTGTACGGTCTGGAGGTGACCGGCTCCTCCGAGCTGACTGCCACGTGGAACATCACCCTCCTGGCCACAAACCCCAACCGGAAGCTCGTCGTCGGCTTTGACGACGTGCGTGTCTCTGTGTATCACGGCTCAACGGAAAACTTCGTCCACGCCGACGACGAGGAGAGTTACATTTTGGGAAAGAAGCAGCTGTCGTCTCCTTTCTTCTTATTCACGGGCAACCAGACTCGTCTCAACTTCAATTTCGGAGTTTTCAAAGGTACCTTCGGTGGTGACACGGCCATGGAAATCTCCAAGGAGAAGGCTCTTAATGGATCGGTCAAATTCGGGGTGTGGCTTGTGGTTCGGTTTAGGTATAGGACAGAGGTCTGGGGCAAGGGAAGTCCCGGTATTCTTGACCTATACTGCGACGAGGGGGAGTTTCTCTTCTCCCCCAAGACCAATGACACTGGAATTCTCACACATCAGTTGAGGTGCGACATGTTTAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

226

Amino Acids

25.21

Weight (kDa)

4.84

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 2 cut(s) 177, 180
AclWI GGATC 2 cut(s) 51, 505
AcoI YGGCCR 2 cut(s) 246, 462
AcsI RAATTY 2 cut(s) 506, 636
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 148, 188, 445
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 2 cut(s) 424, 439
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 4 cut(s) 169, 217, 268, 373
AluI AGCT 4 cut(s) 169, 217, 268, 373
Alw26I GTCTC 3 cut(s) 301, 384, 419
AlwI GGATC 2 cut(s) 51, 505
Ama87I CYCGRG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 2 cut(s) 246, 462
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 506, 636
Asp718I GGTACC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 211, 229, 467
AvaI CYCGRG 1 cut(s) 38
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 382
BceAI ACGGC 2 cut(s) 325, 477
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 3 cut(s) 301, 384, 419
BisI GCNGC 2 cut(s) 180, 371
BlsI GCNGC 2 cut(s) 181, 372
Bme1390I CCNGG 2 cut(s) 245, 570
BmeT110I CYCGRG 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 208, 445
BmrFI CCNGG 2 cut(s) 245, 570
BoxI GACNNNNGTC 2 cut(s) 9, 548
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 39, 142, 465, 477
BsaWI WCCGGW 2 cut(s) 92, 261
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 92
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 4 cut(s) 39, 142, 465, 477
BseGI GGATG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 2 cut(s) 199, 359
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 2 cut(s) 248, 464
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 4 cut(s) 93, 204, 262, 570
BslFI GGGAC 2 cut(s) 58, 552
BsmAI GTCTC 3 cut(s) 301, 384, 419
BsmBI CGTCTC 2 cut(s) 384, 419
BsmFI GGGAC 2 cut(s) 58, 552
BsnI GGCC 2 cut(s) 248, 464
BsoBI CYCGRG 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 92
Bsp143I GATC 3 cut(s) 43, 133, 497
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 2 cut(s) 177, 180
BspANI GGCC 2 cut(s) 248, 464
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 208, 445
BspPI GGATC 2 cut(s) 51, 505
BspT107I GGYRCC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 39, 142, 465, 477
BssMI GATC 3 cut(s) 43, 133, 497
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 465, 477
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 614
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 465
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 3 cut(s) 46, 136, 500
BstMAI GTCTC 3 cut(s) 301, 384, 419
BstMBI GATC 3 cut(s) 43, 133, 497
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 667
BstPAI GACNNNNGTC 2 cut(s) 9, 548
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 243, 568
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 2 cut(s) 248, 464
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 465
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 630
Cfr10I RCCGGY 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 147, 187, 444
CviAII CATG 3 cut(s) 70, 466, 664
CviQI GTAC 3 cut(s) 147, 187, 444
DpnI GATC 3 cut(s) 45, 135, 499
DpnII GATC 3 cut(s) 43, 133, 497
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 2 cut(s) 246, 462
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 465, 477
Eco72I CACGTG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 465, 477
ErhI CCWWGG 2 cut(s) 465, 477
Esp3I CGTCTC 2 cut(s) 384, 419
FaeI CATG 3 cut(s) 73, 469, 667
FaiI YATR 6 cut(s) 17, 71, 467, 540, 586, 665
FaqI GGGAC 2 cut(s) 58, 552
FatI CATG 3 cut(s) 69, 465, 663
Fnu4HI GCNGC 2 cut(s) 180, 371
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 180, 371
GluI GCNGC 2 cut(s) 180, 371
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 2 cut(s) 248, 464
HapII CCGG 4 cut(s) 93, 204, 262, 570
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 73, 469, 667
HinfI GANTC 3 cut(s) 32, 173, 409
HpaII CCGG 4 cut(s) 93, 204, 262, 570
HphI GGTGA 3 cut(s) 211, 229, 467
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 22, 214, 431
Hpy188III TCNNGA 4 cut(s) 38, 93, 194, 578
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 9 cut(s) 26, 51, 128, 275, 278, 290, 341, 344, 596
HpyAV CCTTC 2 cut(s) 457, 478
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 3 cut(s) 123, 227, 288
HpySE526I ACGT 3 cut(s) 123, 227, 288
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 73, 469, 667
Kpn2I TCCGGA 1 cut(s) 92
KpnI GGTACC 1 cut(s) 447
Kzo9I GATC 3 cut(s) 43, 133, 497
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 382
MaeII ACGT 3 cut(s) 123, 227, 288
MaeIII GTNAC 3 cut(s) 199, 350, 455
MalI GATC 3 cut(s) 45, 135, 499
MboI GATC 3 cut(s) 43, 133, 497
MboII GAAGA 3 cut(s) 154, 379, 601
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 4 cut(s) 60, 424, 506, 636
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 45
Mox20I TGGCCA 1 cut(s) 248
MroI TCCGGA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 248
MseI TTAA 2 cut(s) 492, 669
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 4 cut(s) 93, 204, 262, 570
MspR9I CCNGG 2 cut(s) 245, 570
MvaI CCWGG 1 cut(s) 245
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 465
NdeII GATC 3 cut(s) 43, 133, 497
NlaIII CATG 3 cut(s) 73, 469, 667
NlaIV GGNNCC 2 cut(s) 208, 445
NmuCI GTSAC 2 cut(s) 199, 455
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 6 cut(s) 36, 55, 129, 282, 333, 339
PfeI GAWTC 2 cut(s) 32, 173
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 181, 372
PleI GAGTC 1 cut(s) 403
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 228
PscI ACATGT 1 cut(s) 663
PshAI GACNNNNGTC 2 cut(s) 9, 548
Psp6I CCWGG 1 cut(s) 243
PspCI CACGTG 1 cut(s) 228
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 208, 445
PsyI GACNNNGTC 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 3 cut(s) 148, 188, 445
RsaNI GTAC 3 cut(s) 147, 187, 444
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 2 cut(s) 492, 669
SatI GCNGC 2 cut(s) 180, 371
Sau3AI GATC 3 cut(s) 43, 133, 497
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 245, 570
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse9I AATT 4 cut(s) 60, 424, 506, 636
SsiI CCGC 2 cut(s) 177, 180
StyD4I CCNGG 2 cut(s) 243, 568
StyI CCWWGG 2 cut(s) 465, 477
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 3 cut(s) 126, 230, 291
TaqI TCGA 2 cut(s) 132, 171
TaqII GACCGA 1 cut(s) 490
TasI AATT 4 cut(s) 60, 424, 506, 636
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 32, 173
Tru1I TTAA 2 cut(s) 492, 669
Tru9I TTAA 2 cut(s) 492, 669
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 199, 455
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 2 cut(s) 199, 455
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 637
Tth111I GACNNNGTC 1 cut(s) 125
XapI RAATTY 2 cut(s) 506, 636
XceI RCATGY 1 cut(s) 667
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.