Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

32377335 .. 32377922

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGTATCGTCTTCCTTCCGCCGACCTGAAAGATCCCGAGGATCGTCGGATGAACATGAGAGCTCTCACGTCCATGGTCCTCGTAGTCTGCGGATGCTTGTTGGTGATGACGCTAATAGACGGCATCATCGATCAGAAGCTCGGTACTGAAGAGCCCGTGTTCCAGGTCGAATCGGCCGCCGTGTACGGACTGGAGGTGACCGACTCCTCCTCCAAGTTCAGTGCCACGTGGAACATCACCCTTCTGGCCACAAACCCCAACCGTAAGCTCGTCATCGACTTTGACAACGTGCATGTCTTTGTGTATTACGGCCCAAAGGGAGACATGGCCTATGCCCGCGACAAGGACTTTTTCACTTTGGCAAAGAAGCAGTCGTCGTCTCCTTTCTTCCTATTCACGGGCAACCAGACTCGTCTCAATTTCAATTTCGGAGTAGTCCGAGGTACCCTTGGTGGTGGCACGGCCATGGCCATGGCAATCTCCAAAGAGAAGGCTCTTAGCGGATCGGTCAAATTCGGGGTGCTGGTTAAGATTGAGTATAGGTATAGGACGAAGGTCTGGAGGAAGGAGGTCCCAATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

195

Amino Acids

21.85

Weight (kDa)

9.32

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	21, 93, 180, 340, 504
AclWI	GGATC	3 cut(s)	29, 51, 514
AcoI	YGGCCR	4 cut(s)	177, 249, 465, 471
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	171
AcvI	CACGTG	1 cut(s)	231
AfaI	GTAC	3 cut(s)	148, 188, 448
AfiI	CCNNNNNNNGG	2 cut(s)	346, 400
AgsI	TTSAA	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	65, 142, 271
AluI	AGCT	3 cut(s)	65, 142, 271
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	3 cut(s)	318, 387, 422
AlwI	GGATC	3 cut(s)	29, 51, 514
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	6 cut(s)	177, 249, 313, 330, 465, 471
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	79, 314, 574
AsuHPI	GGTGA	3 cut(s)	118, 211, 232
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	79, 574
BalI	TGGCCA	2 cut(s)	251, 473
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	67, 159
BbrPI	CACGTG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	67
BceAI	ACGGC	4 cut(s)	139, 167, 328, 480
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	318, 387, 422
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	79, 574
BmeT110I	CYCGRG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	79, 314, 574
BmiI	GGNNCC	2 cut(s)	448, 576
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	86, 135
BoxI	GACNNNNGTC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	5
BpmI	CTGGAG	2 cut(s)	215, 583
Bsa29I	ATCGAT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	6 cut(s)	39, 75, 442, 451, 468, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 400
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	6 cut(s)	39, 75, 442, 451, 468, 474
BseGI	GGATG	2 cut(s)	57, 101
BseLI	CCNNNNNNNGG	2 cut(s)	346, 400
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	199, 202
BseX3I	CGGCCG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	6 cut(s)	179, 251, 315, 332, 467, 473
BshNI	GGYRCC	1 cut(s)	446
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	2 cut(s)	346, 400
BsmAI	GTCTC	3 cut(s)	318, 387, 422
BsmBI	CGTCTC	2 cut(s)	387, 422
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	6 cut(s)	179, 251, 315, 332, 467, 473
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	67, 159
Bsp143I	GATC	4 cut(s)	34, 43, 133, 506
Bsp19I	CCATGG	3 cut(s)	75, 468, 474
BspACI	CCGC	5 cut(s)	21, 93, 180, 340, 504
BspANI	GGCC	6 cut(s)	179, 251, 315, 332, 467, 473
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	448, 576
BspPI	GGATC	3 cut(s)	29, 51, 514
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	6 cut(s)	39, 75, 442, 451, 468, 474
BssMI	GATC	4 cut(s)	34, 43, 133, 506
BssT1I	CCWWGG	4 cut(s)	75, 451, 468, 474
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	3 cut(s)	75, 468, 474
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	57, 101
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	4 cut(s)	37, 46, 136, 509
BstMAI	GTCTC	3 cut(s)	318, 387, 422
BstMBI	GATC	4 cut(s)	34, 43, 133, 506
BstMCI	CGRYCG	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	299
BstPAI	GACNNNNGTC	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	6 cut(s)	179, 251, 315, 332, 467, 473
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	3 cut(s)	75, 468, 474
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	57, 101
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	79, 314, 574
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	147, 187, 447
CviAII	CATG	6 cut(s)	58, 76, 296, 328, 469, 475
CviQI	GTAC	3 cut(s)	147, 187, 447
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	4 cut(s)	36, 45, 135, 508
DpnII	GATC	4 cut(s)	34, 43, 133, 506
EaeI	YGGCCR	4 cut(s)	177, 249, 465, 471
EagI	CGGCCG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	4 cut(s)	75, 451, 468, 474
Eco24I	GRGCYC	2 cut(s)	67, 159
Eco47I	GGWCC	2 cut(s)	79, 574
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	574
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	4 cut(s)	75, 451, 468, 474
EcoT38I	GRGCYC	2 cut(s)	67, 159
ErhI	CCWWGG	4 cut(s)	75, 451, 468, 474
Esp3I	CGTCTC	2 cut(s)	387, 422
FaeI	CATG	6 cut(s)	61, 79, 299, 331, 472, 478
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	6 cut(s)	57, 75, 295, 327, 468, 474
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	64, 108
FriOI	GRGCYC	2 cut(s)	67, 159
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	2 cut(s)	215, 583
HaeIII	GGCC	6 cut(s)	179, 251, 315, 332, 467, 473
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	61, 79, 299, 331, 472, 478
HinfI	GANTC	3 cut(s)	173, 206, 412
HphI	GGTGA	3 cut(s)	118, 211, 232
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	51, 138, 434, 443
Hpy188III	TCNNGA	2 cut(s)	38, 562
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	2 cut(s)	51, 382
HpyAV	CCTTC	5 cut(s)	27, 254, 487, 550, 562
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	71, 230, 291
HpyCH4V	TGCA	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	3 cut(s)	71, 230, 291
Hsp92II	CATG	6 cut(s)	61, 79, 299, 331, 472, 478
KpnI	GGTACC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	34, 43, 133, 506
LguI	GCTCTTC	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	41, 152, 179, 179, 233, 422, 512, 547
LweI	GCATC	2 cut(s)	86, 135
MaeII	ACGT	3 cut(s)	71, 230, 291
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	4 cut(s)	36, 45, 135, 508
MboI	GATC	4 cut(s)	34, 43, 133, 506
MboII	GAAGA	3 cut(s)	5, 164, 382
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	67, 159
MlsI	TGGCCA	2 cut(s)	251, 473
MluCI	AATT	4 cut(s)	421, 427, 515, 579
MluNI	TGGCCA	2 cut(s)	251, 473
MlyI	GAGTC	2 cut(s)	200, 406
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	34, 92, 190, 220, 223, 437, 558, 565
Mox20I	TGGCCA	2 cut(s)	251, 473
MscI	TGGCCA	2 cut(s)	251, 473
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	3 cut(s)	74, 467, 473
Msp20I	TGGCCA	2 cut(s)	251, 473
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	342
NcoI	CCATGG	3 cut(s)	75, 468, 474
NdeII	GATC	4 cut(s)	34, 43, 133, 506
NlaIII	CATG	6 cut(s)	61, 79, 299, 331, 472, 478
NlaIV	GGNNCC	2 cut(s)	448, 576
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	2 cut(s)	200, 406
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
PpsI	GAGTC	2 cut(s)	200, 406
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	574
PshAI	GACNNNNGTC	1 cut(s)	557
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	448, 576
PspPI	GGNCC	3 cut(s)	79, 314, 574
PspPPI	RGGWCCY	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	3 cut(s)	148, 188, 448
RsaNI	GTAC	3 cut(s)	147, 187, 447
RseI	CAYNNNNRTG	3 cut(s)	74, 467, 473
SacI	GAGCTC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	34, 43, 133, 506
Sau96I	GGNCC	3 cut(s)	79, 314, 574
SchI	GAGTC	2 cut(s)	200, 406
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	67, 159
SfaNI	GCATC	2 cut(s)	86, 135
SinI	GGWCC	2 cut(s)	79, 574
SmiMI	CAYNNNNRTG	3 cut(s)	74, 467, 473
Sse9I	AATT	4 cut(s)	421, 427, 515, 579
SsiI	CCGC	5 cut(s)	21, 93, 180, 340, 504
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	4 cut(s)	75, 451, 468, 474
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	3 cut(s)	74, 233, 294
TaqI	TCGA	3 cut(s)	132, 171, 279
TaqII	GACCGA	2 cut(s)	218, 499
TasI	AATT	4 cut(s)	421, 427, 515, 579
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	79, 574
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.