RLG00000010740

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002155
Physical Location & Seq
Forward (+)
4050127 .. 4050789
663 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010740

Sequence Viewer

Length: 663 bp
ATGGTAAGGGTTCTACATCGCGACTCATACGACGAACCGATAAATCCTCACGGCGTGGGCTGTTGTATGCTCATATTGCTCAGCCTGATGACCACGCTTCTGCTAATCGACACAATTGTACATCAGTCGCTCAATCCAGAGGAACCCCAGTTCTGGGTCGACTCAGCTGCCGTGACCGGACTCGAGCTCACCGGCTCATCCGGATTGACTGCCACGTGGAACATGAACCTCGTGGCACACAATCCCAACCGCAAGCTCGTGATTGACATCGCCGGTGTCCAAGTGTTCATATATTTCGGAAAAATGGAGAAGTATTACTGGTACAACCATGGGCATCTGGTTGAGAGCCAACACATTCTGGCAACGAAGCTGTTGCGTTCTTTCTTCTTGTACACAGGAAACCAGACGAGTCTGGATTTCAAGGTCGGAGTAGTGGGGCATTGCGTCGACGGCGAGACAGCTAAGGAAGTCTCACAAGGGAAGACGGTGAAGTTCGGGGTGTTTCTGCACGTTGAGTATAAATGTAGGACCAAGGTCTGGTGGATGGGACACACTCGCCCTATTAAGCTCTTGTGCGACCAGGTCGAGTTCCTGATGCTCCCAAACACGAATCACCACACCGGAGTTTCCACCGGTCAGTTTCCTTTCCGCATATTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

221

Amino Acids

24.94

Weight (kDa)

7.19

Isoelectric Point (pI)

21.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AccI GTMKAC 2 cut(s) 159, 447
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 2 cut(s) 250, 649
AcvI CACGTG 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 3 cut(s) 120, 323, 392
AfiI CCNNNNNNNGG 3 cut(s) 153, 154, 537
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 579
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 6 cut(s) 167, 187, 256, 370, 461, 568
AluI AGCT 6 cut(s) 167, 187, 256, 370, 461, 568
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 449, 475
Ama87I CYCGRG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 181, 499, 605
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 189
BauI CACGAG 2 cut(s) 230, 257
BbrPI CACGTG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 538
BceAI ACGGC 3 cut(s) 67, 155, 466
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 355, 389
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 449, 475
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 581
Bme18I GGWCC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 343, 585
BmuI ACTGGG 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 328, 531
BsaWI WCCGGW 4 cut(s) 176, 200, 620, 632
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 154, 537
Bse118I RCCGGY 3 cut(s) 191, 272, 632
Bse1I ACTGG 2 cut(s) 148, 323
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 328, 531
BseGI GGATG 2 cut(s) 197, 549
BseJI GATNNNNATC 1 cut(s) 266
BseLI CCNNNNNNNGG 3 cut(s) 153, 154, 537
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 94, 177
BseNI ACTGG 2 cut(s) 148, 323
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 21
BshTI ACCGGT 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 6 cut(s) 177, 192, 201, 273, 621, 633
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 3 cut(s) 153, 154, 537
BsmAI GTCTC 2 cut(s) 449, 475
BsmFI GGGAC 1 cut(s) 561
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 200
Bsp1407I TGTACA 2 cut(s) 118, 390
Bsp1720I GCTNAGC 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 328
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 2 cut(s) 250, 649
BspCNI CTCAG 2 cut(s) 93, 176
BspEI TCCGGA 1 cut(s) 200
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 3 cut(s) 191, 272, 632
BsrGI TGTACA 2 cut(s) 118, 390
BsrI ACTGG 2 cut(s) 148, 323
BssAI RCCGGY 3 cut(s) 191, 272, 632
BssECI CCNNGG 2 cut(s) 328, 531
BssSI CACGAG 2 cut(s) 230, 257
BssT1I CCWWGG 2 cut(s) 328, 531
Bst2BI CACGAG 2 cut(s) 230, 257
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 1 cut(s) 487
BstAUI TGTACA 2 cut(s) 118, 390
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 80, 163, 462
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 197, 549
BstFNI CGCG 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 449, 475
BstMWI GCNNNNNNNGC 2 cut(s) 76, 450
BstNI CCWGG 1 cut(s) 581
BstPAI GACNNNNGTC 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 579
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 328
BtgZI GCGATG 2 cut(s) 2, 253
BtsCI GGATG 2 cut(s) 197, 549
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 254
Cfr10I RCCGGY 3 cut(s) 191, 272, 632
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 579
Csp6I GTAC 3 cut(s) 119, 322, 391
CspAI ACCGGT 1 cut(s) 632
CviAII CATG 2 cut(s) 223, 329
CviQI GTAC 3 cut(s) 119, 322, 391
DdeI CTNAG 3 cut(s) 80, 163, 462
DraIII CACNNNGTG 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 328, 531
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 328, 531
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 2 cut(s) 328, 531
FaeI CATG 2 cut(s) 226, 332
FaiI YATR 9 cut(s) 28, 68, 74, 224, 290, 292, 330, 519, 653
FaqI GGGAC 1 cut(s) 561
FatI CATG 2 cut(s) 222, 328
FblI GTMKAC 2 cut(s) 159, 447
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 184, 556
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HapII CCGG 6 cut(s) 177, 192, 201, 273, 621, 633
HgaI GACGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 226, 332
HincII GTYRAC 2 cut(s) 160, 448
HindII GTYRAC 2 cut(s) 160, 448
HinfI GANTC 5 cut(s) 23, 161, 180, 409, 610
HpaII CCGG 6 cut(s) 177, 192, 201, 273, 621, 633
HphI GGTGA 3 cut(s) 181, 499, 605
Hpy166II GTNNAC 3 cut(s) 160, 393, 448
Hpy188I TCNGA 2 cut(s) 299, 428
Hpy188III TCNNGA 6 cut(s) 20, 137, 201, 259, 413, 592
Hpy8I GTNNAC 3 cut(s) 160, 393, 448
Hpy99I CGWCG 3 cut(s) 35, 449, 452
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 215, 510
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 450
HpyF3I CTNAG 3 cut(s) 80, 163, 462
HpySE526I ACGT 2 cut(s) 215, 510
Hsp92II CATG 2 cut(s) 226, 332
Kpn2I TCCGGA 1 cut(s) 200
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 343, 585
MabI ACCWGGT 1 cut(s) 579
MaeII ACGT 2 cut(s) 215, 510
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 2 cut(s) 376, 493
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 114
MlyI GAGTC 4 cut(s) 17, 155, 174, 418
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 3 cut(s) 57, 133, 239
MroI TCCGGA 1 cut(s) 200
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 6 cut(s) 177, 192, 201, 273, 621, 633
MspR9I CCNGG 1 cut(s) 581
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 76, 450
NcoI CCATGG 1 cut(s) 328
NlaIII CATG 2 cut(s) 226, 332
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 182
PfeI GAWTC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 4 cut(s) 17, 155, 174, 417
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
PpsI GAGTC 4 cut(s) 17, 155, 174, 417
Ppu21I YACGTR 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 579
PspCI CACGTG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 528
PspXI VCTCGAGB 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 167
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 3 cut(s) 120, 323, 392
RsaNI GTAC 3 cut(s) 119, 322, 391
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 2 cut(s) 158, 446
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 4 cut(s) 17, 155, 174, 418
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 189
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 2 cut(s) 343, 585
Sfr274I CTCGAG 1 cut(s) 182
SgrAI CRCCGGYG 1 cut(s) 272
SgrDI CGTCGACG 1 cut(s) 446
SinI GGWCC 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 114
SsiI CCGC 2 cut(s) 250, 649
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 2 cut(s) 328, 531
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 218, 513
TaqI TCGA 5 cut(s) 108, 159, 183, 447, 585
TasI AATT 1 cut(s) 114
TatI WGTACW 2 cut(s) 118, 390
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 239, 277
Tth111I GACNNNGTC 1 cut(s) 581
Van91I CCANNNNNTGG 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 528
XhoI CTCGAG 1 cut(s) 182
XmiI GTMKAC 2 cut(s) 159, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.