Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

16264414 .. 16264728

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAATCCTCAAAGACCCCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAACTCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTTGTCCCTCTATCATGGAGACAAGAAAGACGTGTGCTCTACTGGGACGGGAGAACTAAGACCACACGCATTATCTCGATCAATTGCAACCACGATGTTGTGTAAGCCATTCTTCCTGGACAAAGGAGGGAACCAGACACCCATGTCAATTTCAAAATCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

104

Amino Acids

11.2

Weight (kDa)

7.75

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	2 cut(s)	36, 105
AcvI	CACGTG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	303
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	49, 162
Aor13HI	TCCGGA	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	52, 85
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	49, 162
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	67, 105
BlsI	GCNGC	2 cut(s)	68, 106
Bme1390I	CCNGG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	2 cut(s)	13, 201
BmuI	ACTGGG	2 cut(s)	13, 201
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	19, 70, 196
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	124
BseNI	ACTGG	3 cut(s)	19, 70, 196
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	48, 63
BslFI	GGGAC	2 cut(s)	139, 208
BsmAI	GTCTC	2 cut(s)	49, 162
BsmFI	GGGAC	2 cut(s)	139, 208
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	27, 227
BspACI	CCGC	2 cut(s)	36, 105
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	19, 70, 196
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	27, 227
Bst2UI	CCWGG	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	30, 230
BstMAI	GTCTC	2 cut(s)	49, 162
BstMBI	GATC	2 cut(s)	27, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	62
CseI	GACGC	1 cut(s)	46
CviAII	CATG	2 cut(s)	164, 292
CviJI	RGCY	2 cut(s)	66, 256
CviKI_1	RGCY	2 cut(s)	66, 256
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	29, 229
DpnII	GATC	2 cut(s)	27, 227
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	167, 295
FaiI	YATR	2 cut(s)	165, 293
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	2 cut(s)	139, 208
FatI	CATG	2 cut(s)	163, 291
Fnu4HI	GCNGC	2 cut(s)	67, 105
Fsp4HI	GCNGC	2 cut(s)	67, 105
GluI	GCNGC	2 cut(s)	67, 105
HapII	CCGG	2 cut(s)	48, 63
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	167, 295
HincII	GTYRAC	2 cut(s)	75, 133
HindII	GTYRAC	2 cut(s)	75, 133
HinfI	GANTC	2 cut(s)	4, 32
HpaI	GTTAAC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	48, 63
HphI	GGTGA	2 cut(s)	52, 85
Hpy166II	GTNNAC	2 cut(s)	75, 133
Hpy188I	TCNGA	2 cut(s)	27, 141
Hpy188III	TCNNGA	2 cut(s)	48, 225
Hpy8I	GTNNAC	2 cut(s)	75, 133
HpyCH4IV	ACGT	2 cut(s)	83, 180
HpyCH4V	TGCA	2 cut(s)	121, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	83, 180
Hsp92II	CATG	2 cut(s)	167, 295
Kpn2I	TCCGGA	1 cut(s)	47
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	27, 227
LpnPI	CCDG	9 cut(s)	32, 61, 76, 83, 131, 177, 251, 278, 296
Lsp1109I	GCAGC	1 cut(s)	53
MaeII	ACGT	2 cut(s)	83, 180
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	29, 229
MboI	GATC	2 cut(s)	27, 227
MboII	GAAGA	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	231, 297
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	18, 107, 110, 134, 167, 269
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	1 cut(s)	74
MspI	CCGG	2 cut(s)	48, 63
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	2 cut(s)	27, 227
NlaIII	CATG	2 cut(s)	167, 295
NlaIV	GGNNCC	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	68, 106
PleI	GAGTC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	67, 105
Sau3AI	GATC	2 cut(s)	27, 227
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	86, 120, 126, 183
Sse9I	AATT	2 cut(s)	231, 297
SsiI	CCGC	2 cut(s)	36, 105
StyD4I	CCNGG	1 cut(s)	264
TaiI	ACGT	2 cut(s)	86, 183
TaqI	TCGA	3 cut(s)	30, 147, 226
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	231, 297
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.