Rh6DG468700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002155
Physical Location & Seq
Reverse (-)
63597976 .. 63598425
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG468700.1

Sequence Viewer

Length: 450 bp
ATGACGCTCGTGGCACACAATCCCAACCGCAAGCTCGTGATCGACATCGCCGGTGTCCAAGTGTTCATATATTTCGGAAAAATTAATGGAGATCGAAGTACTACTGGTACAAACCATGGGCATCTGGTTGAGAGCCAACACATTCTGGCGACGAAGCTGTTGCCTTCTTTCTTCTTGTACACAGGAAACCAGACGAGTCTGGATTTCAAGGTCGGAGTAGTGGGGCATTGCGTCGACGGCGAGACAGCTAAGGAAGTCTCACAAGGGAGGACGGTGAAGTTCGGGGTGTTTCTGCACGTTGAGTATAAATATAGGACCAAGGTCTGGTTGATGGGAGACACTCCCCCTATTAAGCTCTTGTGCGACCAGGTCGAGTTCCTGTTGCTCCCAAATACGAATCACCACACCGGAGTTTCCACCGGTCAGTTTCCTTGCCGCATATTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

8.83

Isoelectric Point (pI)

6.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 28, 436
AfaI GTAC 3 cut(s) 100, 109, 179
AfiI CCNNNNNNNGG 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 34, 157, 248, 355
AluI AGCT 4 cut(s) 34, 157, 248, 355
Alw26I GTCTC 3 cut(s) 236, 262, 330
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 286, 392
AvaII GGWCC 1 cut(s) 315
BauI CACGAG 2 cut(s) 8, 35
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 3 cut(s) 236, 262, 330
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 115, 318
BsaWI WCCGGW 2 cut(s) 407, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 50, 419
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 115, 318
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 419
BsiSI CCGG 3 cut(s) 51, 408, 420
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 3 cut(s) 236, 262, 330
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 2 cut(s) 39, 91
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 2 cut(s) 28, 436
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 2 cut(s) 50, 419
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 2 cut(s) 50, 419
BssECI CCNNGG 2 cut(s) 115, 318
BssMI GATC 2 cut(s) 39, 91
BssSI CACGAG 2 cut(s) 8, 35
BssT1I CCWWGG 2 cut(s) 115, 318
Bst2BI CACGAG 2 cut(s) 8, 35
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 115
BstKTI GATC 2 cut(s) 42, 94
BstMAI GTCTC 3 cut(s) 236, 262, 330
BstMBI GATC 2 cut(s) 39, 91
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 368
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 2 cut(s) 50, 419
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 2 cut(s) 13, 220
CsiI ACCWGGT 1 cut(s) 366
Csp6I GTAC 3 cut(s) 99, 108, 178
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 34, 135, 157, 248, 355
CviKI_1 RGCY 5 cut(s) 34, 135, 157, 248, 355
CviQI GTAC 3 cut(s) 99, 108, 178
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 41, 93
DpnII GATC 2 cut(s) 39, 91
Eco130I CCWWGG 2 cut(s) 115, 318
Eco47I GGWCC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 115, 318
ErhI CCWWGG 2 cut(s) 115, 318
FaeI CATG 1 cut(s) 119
FaiI YATR 6 cut(s) 68, 70, 117, 306, 312, 440
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 436
GluI GCNGC 1 cut(s) 436
HapII CCGG 3 cut(s) 51, 408, 420
HgaI GACGC 2 cut(s) 13, 220
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 196, 397
HpaII CCGG 3 cut(s) 51, 408, 420
HphI GGTGA 2 cut(s) 286, 392
Hpy166II GTNNAC 2 cut(s) 180, 235
Hpy188I TCNGA 2 cut(s) 77, 215
Hpy188III TCNNGA 2 cut(s) 37, 200
Hpy8I GTNNAC 2 cut(s) 180, 235
Hpy99I CGWCG 3 cut(s) 154, 236, 239
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 39, 91
LmnI GCTCC 1 cut(s) 390
LweI GCATC 1 cut(s) 130
MabI ACCWGGT 1 cut(s) 366
MaeII ACGT 1 cut(s) 297
MalI GATC 2 cut(s) 41, 93
MboI GATC 2 cut(s) 39, 91
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 261
MseI TTAA 2 cut(s) 84, 351
MspI CCGG 3 cut(s) 51, 408, 420
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 115
NdeII GATC 2 cut(s) 39, 91
NlaIII CATG 1 cut(s) 119
PfeI GAWTC 1 cut(s) 397
PflFI GACNNNGTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 3 cut(s) 100, 109, 179
RsaNI GTAC 3 cut(s) 99, 108, 178
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 84, 351
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 2 cut(s) 39, 91
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 368
SetI ASST 8 cut(s) 36, 159, 213, 250, 300, 324, 357, 372
SexAI ACCWGGT 1 cut(s) 366
SfaNI GCATC 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 50
SgrDI CGTCGACG 1 cut(s) 233
SinI GGWCC 1 cut(s) 315
Sse9I AATT 1 cut(s) 81
SsiI CCGC 2 cut(s) 28, 436
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 115, 318
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 300
TaqI TCGA 4 cut(s) 42, 94, 234, 372
TasI AATT 1 cut(s) 81
TatI WGTACW 2 cut(s) 98, 177
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 2 cut(s) 84, 351
Tru9I TTAA 2 cut(s) 84, 351
TspDTI ATGAA 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 368
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.