Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

32741089 .. 32741977

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024171

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGAGCTTTTCTTGCGTCCCACAAAGAATCAGACCGATATTTGCGAATATGTATGCGGATGATCGCTGCTGCCGTGTTCGAACTGGAGACGACTGACTACGATTTAAGTGCGACATGGAACTTTACGCTCGTCGCTTCATACCTTAATTATGGAAAGCTAGCCATTTTCGACCGTGTCCGAGTATTCGTCTACTACCGCCCCAAAGGCTACATGTATTATGGGGATGAGTACAAGTACTCTCTCGCAAAGACGCAGTTGCCTCCTTTTTTTATGTACGGAGGGAACCAAACCCGGCTCGATTTCAAGGTCGGAGTAATTGGCATGGGGCTCCTGTCAGCCCTCACGAAGCCAAACAAATCTCGGTGGGGAAGACTCTGGTTGGTCAGTGAAATTTGGGTTGATGCTGATGACTCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

141

Amino Acids

16.21

Weight (kDa)

8.92

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	3 cut(s)	58, 199, 417
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	3 cut(s)	233, 239, 278
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	8, 160
AluI	AGCT	2 cut(s)	8, 160
Alw26I	GTCTC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	68, 71
ApoI	RAATTY	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	55, 58
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	287, 332
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	394
BmtI	GCTAGC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	66, 232
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	55, 58
Bsh1285I	CGRYCG	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	58, 199, 417
BspLI	GGNNCC	2 cut(s)	287, 332
BspOI	GCTAGC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	66, 232
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	63
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 207
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	55, 58
BstV2I	GAAGAC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	66, 232
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	162
CseI	GACGC	2 cut(s)	6, 262
Csp6I	GTAC	3 cut(s)	232, 238, 277
CviAII	CATG	3 cut(s)	117, 214, 325
CviJI	RGCY	8 cut(s)	8, 160, 164, 210, 298, 331, 341, 352
CviKI_1	RGCY	8 cut(s)	8, 160, 164, 210, 298, 331, 341, 352
CviQI	GTAC	3 cut(s)	232, 238, 277
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	3 cut(s)	120, 217, 328
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	116, 213, 324
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	69, 72
FokI	GGATG	2 cut(s)	73, 239
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	69, 72
GsuI	CTGGAG	1 cut(s)	107
HapII	CCGG	1 cut(s)	295
HgaI	GACGC	2 cut(s)	6, 262
Hin1II	CATG	3 cut(s)	120, 217, 328
HinfI	GANTC	3 cut(s)	29, 375, 413
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	34, 182, 314
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 207
Hsp92II	CATG	3 cut(s)	120, 217, 328
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	5, 336
LpnPI	CCDG	4 cut(s)	71, 308, 347, 364
Lsp1109I	GCAGC	2 cut(s)	55, 58
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	161
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	148, 318, 393
MlyI	GAGTC	2 cut(s)	369, 407
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	3 cut(s)	273, 275, 353
MseI	TTAA	2 cut(s)	107, 147
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	14, 207
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	63
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	120, 217, 328
NlaIV	GGNNCC	2 cut(s)	287, 332
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	70, 73
PleI	GAGTC	2 cut(s)	369, 407
PpsI	GAGTC	2 cut(s)	369, 407
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	287, 332
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	3 cut(s)	233, 239, 278
RsaNI	GTAC	3 cut(s)	232, 238, 277
SaqAI	TTAA	2 cut(s)	107, 147
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	369, 407
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	10, 147, 162, 312
SfaNI	GCATC	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	81
Sse9I	AATT	3 cut(s)	148, 318, 393
SsiI	CCGC	3 cut(s)	58, 199, 417
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	81, 171, 300
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	148, 318, 393
TatI	WGTACW	2 cut(s)	231, 237
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	107, 147
Tru9I	TTAA	2 cut(s)	107, 147
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	2 cut(s)	68, 71
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.