Rh3BG194100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002155
Physical Location & Seq
Reverse (-)
17175274 .. 17183581
8308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG194100.1

Sequence Viewer

Length: 981 bp
ATGCCAGCGTGGGTTTCTTTTTATCGCAATCGTCCTCCTCCCTACGAATTCAAAGACAACAAAGACCGTGAGAAGGACATACTTCTCATTAAATTCCTTATTGGTATACCCTTCGTCTTGTTATTAAGCTTCGCCGTGTACCAAAAGTTCTTGGTATACAAGATGAATCTTCAAAGACCGCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTCGTCCCTCTATCATGGAGATAAGAAAGACGTGCTCTACTGGGATGGGAGATCCAAGACGACATGCATTATCTCAATCGCAACCACGAGGTTGTGTAAGCCATTCTTCCTCGACAAAGGAGGGAACCGGACCACCCTTGTCAATTTCAAACTCGCAGTAGTGAATAAGAACGTCGGCTGTGGCTTGGCGAAGGAGATCTCAGAGGGAGCGGCTCGTGGTGGCAAAGTCAAATTCGGGCTGCGCATCAGGCTTTTCTTTTATTATAGAACTAGGAATTGGGGCCTGCGAGTTCTCCATGATGTTAGCTTCTTCTGTAATCGGGTTGAATTCGTGTTCCCTCCGAATAATAACCATGGCACTGGAATTTTCAAAGGTCACTCGCGGGAATGCCCAGATTCTTGCTCAACTATGGGAGATTATTTAGTGAGTAAGGACGTCGACTGTGTCTTGGCGAAGGAGATCTCAGAGGAAGCGGCTCGTGGTGGAAAAGTCAAATTTGGGCTGGGCATCAGTCTTTTGTTTGATTATAGAACCAAGTTTTGGATGCTGCAAGGTCCCGGTGAAGTTAGCTTCTTCTGTAATCGGGTCGAATTTGTGTTCGCCCCGAGTAATAATCATGGCACTGGAATTTTCAAAGAAATACGGTGGTTGTTGACGAGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

326

Amino Acids

37.0

Weight (kDa)

9.38

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 750
Acc16I TGCGCA 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 521
AccI GTMKAC 3 cut(s) 106, 156, 750
AccII CGCG 1 cut(s) 694
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 6 cut(s) 179, 198, 267, 521, 694, 785
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 8 cut(s) 47, 92, 542, 638, 675, 806, 902, 939
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 747
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 73, 852
AgsI TTSAA 6 cut(s) 52, 173, 460, 638, 682, 946
AjiI CACGTC 1 cut(s) 343
AjuI GAANNNNNNNTTGG 4 cut(s) 571, 603, 835, 867
AluBI AGCT 3 cut(s) 129, 618, 882
AluI AGCT 3 cut(s) 129, 618, 882
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 916
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 228, 550, 859
ApoI RAATTY 8 cut(s) 47, 92, 542, 638, 675, 806, 902, 939
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 3 cut(s) 441, 592, 866
AsuC2I CCSGG 1 cut(s) 870
AsuHPI GGTGA 3 cut(s) 214, 247, 884
AvaI CYCGRG 1 cut(s) 916
AvaII GGWCC 2 cut(s) 441, 866
BauI CACGAG 3 cut(s) 397, 525, 789
BbrPI CACGTG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 215, 537, 846
BccI CCATC 2 cut(s) 314, 350
BceAI ACGGC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 870
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 288
BglII AGATCT 2 cut(s) 507, 771
BisI GCNGC 6 cut(s) 229, 267, 522, 551, 786, 860
BlsI GCNGC 6 cut(s) 230, 268, 523, 552, 787, 861
Bme1390I CCNGG 1 cut(s) 870
Bme18I GGWCC 2 cut(s) 441, 866
BmeT110I CYCGRG 1 cut(s) 916
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 441, 592, 866
BmiI GGNNCC 3 cut(s) 437, 593, 868
BmrFI CCNGG 1 cut(s) 870
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 564, 828, 846
BmuI ACTGGG 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 870
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 286, 664
BsaWI WCCGGW 2 cut(s) 209, 438
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 852
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 232, 356, 676, 940
BseAI TCCGGA 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 286, 664
BseGI GGATG 2 cut(s) 361, 861
BseLI CCNNNNNNNGG 2 cut(s) 73, 852
BseMII CTCAG 2 cut(s) 525, 789
BseNI ACTGG 4 cut(s) 232, 356, 676, 940
BseRI GAGGAG 2 cut(s) 27, 251
BseXI GCAGC 3 cut(s) 215, 537, 846
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 694
BshFI GGCC 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 916
BsiSI CCGG 4 cut(s) 210, 225, 439, 870
BslFI GGGAC 2 cut(s) 301, 852
BslI CCNNNNNNNGG 2 cut(s) 73, 852
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 301, 852
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 916
Bsp1286I GDGCHC 1 cut(s) 348
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 4 cut(s) 189, 362, 507, 771
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 6 cut(s) 179, 198, 267, 521, 694, 785
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 524, 788
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 437, 593, 868
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 4 cut(s) 232, 356, 676, 940
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 286, 664
BssMI GATC 4 cut(s) 189, 362, 507, 771
BssNAI GTATAC 2 cut(s) 107, 157
BssNI GRCGYC 1 cut(s) 747
BssSI CACGAG 3 cut(s) 397, 525, 789
BssT1I CCWWGG 1 cut(s) 664
Bst1107I GTATAC 2 cut(s) 107, 157
Bst2BI CACGAG 3 cut(s) 397, 525, 789
Bst4CI ACNGT 3 cut(s) 68, 755, 957
BstACI GRCGYC 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 6, 596
BstDEI CTNAG 2 cut(s) 511, 775
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 361, 861
BstFNI CGCG 1 cut(s) 694
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 4 cut(s) 192, 365, 510, 774
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 4 cut(s) 189, 362, 507, 771
BstMWI GCNNNNNNNGC 2 cut(s) 225, 559
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 868
BstUI CGCG 1 cut(s) 694
BstV1I GCAGC 3 cut(s) 215, 537, 846
BstX2I RGATCY 3 cut(s) 362, 507, 771
BstXI CCANNNNNNTGG 1 cut(s) 671
BstYI RGATCY 3 cut(s) 362, 507, 771
BstZ17I GTATAC 2 cut(s) 107, 157
BsuRI GGCC 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 664
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 361, 861
BtsIMutI CAGTG 2 cut(s) 669, 933
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 6, 596
CfoI GCGC 1 cut(s) 555
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 441, 592, 866
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 139
CviAII CATG 5 cut(s) 326, 375, 608, 665, 929
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 511, 775
DpnI GATC 4 cut(s) 191, 364, 509, 773
DpnII GATC 4 cut(s) 189, 362, 507, 771
Eco130I CCWWGG 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 441, 866
Eco72I CACGTG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 916
EcoO109I RGGNCCY 2 cut(s) 592, 866
EcoRI GAATTC 2 cut(s) 47, 638
EcoT14I CCWWGG 1 cut(s) 664
EcoT22I ATGCAT 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 5 cut(s) 329, 378, 611, 668, 932
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 301, 852
FatI CATG 5 cut(s) 325, 374, 607, 664, 928
FauI CCCGC 1 cut(s) 687
FblI GTMKAC 3 cut(s) 106, 156, 750
Fnu4HI GCNGC 6 cut(s) 229, 267, 522, 551, 786, 860
FokI GGATG 2 cut(s) 368, 868
Fsp4HI GCNGC 6 cut(s) 229, 267, 522, 551, 786, 860
FspBI CTAG 1 cut(s) 582
FspI TGCGCA 1 cut(s) 554
GlaI GCGC 1 cut(s) 554
GluI GCNGC 6 cut(s) 229, 267, 522, 551, 786, 860
GsaI CCCAGC 1 cut(s) 818
HaeIII GGCC 1 cut(s) 594
HapII CCGG 4 cut(s) 210, 225, 439, 870
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 747
Hin1II CATG 5 cut(s) 329, 378, 611, 668, 932
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 4 cut(s) 237, 295, 751, 966
HindII GTYRAC 4 cut(s) 237, 295, 751, 966
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 4 cut(s) 166, 194, 311, 707
HpaI GTTAAC 1 cut(s) 237
HpaII CCGG 4 cut(s) 210, 225, 439, 870
HphI GGTGA 3 cut(s) 214, 247, 884
Hpy166II GTNNAC 7 cut(s) 107, 139, 157, 237, 295, 751, 966
Hpy188I TCNGA 5 cut(s) 189, 303, 514, 654, 778
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 7 cut(s) 107, 139, 157, 237, 295, 751, 966
Hpy99I CGWCG 2 cut(s) 488, 752
HpyAV CCTTC 4 cut(s) 67, 121, 496, 760
HpyCH4III ACNGT 3 cut(s) 68, 755, 957
HpyCH4IV ACGT 4 cut(s) 245, 342, 483, 747
HpyCH4V TGCA 3 cut(s) 283, 378, 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 559
HpyF3I CTNAG 2 cut(s) 511, 775
HpySE526I ACGT 4 cut(s) 245, 342, 483, 747
Hsp92I GRCGYC 1 cut(s) 747
Hsp92II CATG 5 cut(s) 329, 378, 611, 668, 932
HspAI GCGC 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 209
KspAI GTTAAC 1 cut(s) 237
Kzo9I GATC 4 cut(s) 189, 362, 507, 771
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 3 cut(s) 215, 537, 846
LweI GCATC 3 cut(s) 564, 828, 846
MaeI CTAG 1 cut(s) 582
MaeII ACGT 4 cut(s) 245, 342, 483, 747
MaeIII GTNAC 2 cut(s) 220, 686
MalI GATC 4 cut(s) 191, 364, 509, 773
MbiI CCGCTC 1 cut(s) 521
MboI GATC 4 cut(s) 189, 362, 507, 771
MboII GAAGA 4 cut(s) 161, 409, 613, 877
MflI RGATCY 3 cut(s) 362, 507, 771
MhlI GDGCHC 1 cut(s) 348
MlyI GAGTC 2 cut(s) 188, 305
Mph1103I ATGCAT 1 cut(s) 380
MroI TCCGGA 1 cut(s) 209
MseI TTAA 3 cut(s) 90, 125, 236
MspI CCGG 4 cut(s) 210, 225, 439, 870
MspR9I CCNGG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 704
MvnI CGCG 1 cut(s) 694
MwoI GCNNNNNNNGC 2 cut(s) 225, 559
NciI CCSGG 1 cut(s) 870
NcoI CCATGG 1 cut(s) 664
NdeII GATC 4 cut(s) 189, 362, 507, 771
NlaIII CATG 5 cut(s) 329, 378, 611, 668, 932
NlaIV GGNNCC 3 cut(s) 437, 593, 868
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 220, 686
NsbI TGCGCA 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 378
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 166, 707
PflFI GACNNNGTC 1 cut(s) 755
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 6 cut(s) 230, 268, 523, 552, 787, 861
PleI GAGTC 2 cut(s) 188, 305
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 2 cut(s) 188, 305
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 866
Psp5II RGGWCCY 1 cut(s) 866
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 814
PspN4I GGNNCC 3 cut(s) 437, 593, 868
PspPI GGNCC 3 cut(s) 441, 592, 866
PspPPI RGGWCCY 1 cut(s) 866
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PsuI RGATCY 3 cut(s) 362, 507, 771
PsyI GACNNNGTC 1 cut(s) 755
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SalI GTCGAC 1 cut(s) 749
SaqAI TTAA 3 cut(s) 90, 125, 236
SatI GCNGC 6 cut(s) 229, 267, 522, 551, 786, 860
Sau3AI GATC 4 cut(s) 189, 362, 507, 771
Sau96I GGNCC 3 cut(s) 441, 592, 866
SchI GAGTC 2 cut(s) 188, 305
ScrFI CCNGG 1 cut(s) 870
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 3 cut(s) 564, 828, 846
SinI GGWCC 2 cut(s) 441, 866
SsiI CCGC 6 cut(s) 179, 198, 267, 521, 694, 785
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 868
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 68, 755, 957
TaiI ACGT 4 cut(s) 248, 345, 486, 750
TaqI TCGA 5 cut(s) 192, 309, 423, 750, 900
TaqII GACCGA 1 cut(s) 193
TauI GCSGC 3 cut(s) 269, 524, 788
TfiI GAWTC 2 cut(s) 166, 707
Tru1I TTAA 3 cut(s) 90, 125, 236
Tru9I TTAA 3 cut(s) 90, 125, 236
TscAI CASTG 2 cut(s) 676, 940
TseFI GTSAC 2 cut(s) 220, 686
TseI GCWGC 3 cut(s) 228, 550, 859
Tsp45I GTSAC 2 cut(s) 220, 686
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 2 cut(s) 676, 940
Tth111I GACNNNGTC 1 cut(s) 755
Van91I CCANNNNNTGG 1 cut(s) 852
VpaK11BI GGWCC 2 cut(s) 441, 866
XapI RAATTY 8 cut(s) 47, 92, 542, 638, 675, 806, 902, 939
XceI RCATGY 1 cut(s) 378
XmiI GTMKAC 3 cut(s) 106, 156, 750
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.