Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

16101903 .. 16102157

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAATCCTCAAAGACCCGAGTTTCAGATCAACTCCGCATCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAATCCTAACGTGCACCTCGGCGTTGACTATCTGGCCATCGACTCGTCCCTCTATTATGGAGACAAGAAAGACGTGCTGTACTGGGACGGGAGTACTAAGACGACACGCATTATCTCAATTCTCAATCGCAACCACAACGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

84

Amino Acids

9.27

Weight (kDa)

6.7

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	2 cut(s)	36, 105
AclI	AACGTT	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	188, 202
AjiI	CACGTC	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	49, 162
Alw44I	GTGCAC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	52, 85
AvaI	CYCGRG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	143
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	49, 162
BisI	GCNGC	2 cut(s)	67, 105
BlsI	GCNGC	2 cut(s)	68, 106
BmcAI	AGTACT	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	70, 194
BseAI	TCCGGA	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	70, 194
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	48, 63
BslFI	GGGAC	2 cut(s)	139, 206
BsmAI	GTCTC	2 cut(s)	49, 162
BsmFI	GGGAC	2 cut(s)	139, 206
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	36, 105
BspANI	GGCC	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	70, 194
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	49, 162
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	62
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	187, 201
CviJI	RGCY	2 cut(s)	66, 143
CviKI_1	RGCY	2 cut(s)	66, 143
CviQI	GTAC	2 cut(s)	187, 201
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	17
FaiI	YATR	1 cut(s)	165
FaqI	GGGAC	2 cut(s)	139, 206
Fnu4HI	GCNGC	2 cut(s)	67, 105
Fsp4HI	GCNGC	2 cut(s)	67, 105
GluI	GCNGC	2 cut(s)	67, 105
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	48, 63
HgaI	GACGC	1 cut(s)	46
HincII	GTYRAC	2 cut(s)	75, 133
HindII	GTYRAC	2 cut(s)	75, 133
HinfI	GANTC	2 cut(s)	4, 149
HpaI	GTTAAC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	48, 63
HphI	GGTGA	2 cut(s)	52, 85
Hpy166II	GTNNAC	3 cut(s)	75, 121, 133
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	3 cut(s)	75, 121, 133
HpyCH4IV	ACGT	4 cut(s)	83, 117, 180, 246
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	4 cut(s)	83, 117, 180, 246
Kpn2I	TCCGGA	1 cut(s)	47
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	61, 76, 83, 125, 175
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	47
MaeII	ACGT	4 cut(s)	83, 117, 180, 246
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	18, 107, 110, 134, 167
Mox20I	TGGCCA	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	48, 63
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	68, 106
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	84
RsaI	GTAC	2 cut(s)	188, 202
RsaNI	GTAC	2 cut(s)	187, 201
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	67, 105
Sau3AI	GATC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	86, 120, 126, 183, 249
SfaNI	GCATC	1 cut(s)	47
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	36, 105
TaiI	ACGT	4 cut(s)	86, 120, 183, 249
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	225
TatI	WGTACW	2 cut(s)	186, 200
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.