RLG00000015053

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002155
Physical Location & Seq
Forward (+)
61069717 .. 61073364
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015053

Sequence Viewer

Length: 498 bp
ATGGCGGCAGCTGGGCTCCTCAGGATGTTTCACGAGGGATCTGGAGGCGGGATTGATGAGCTCTGGTACCAAATCTGGGCGGGTATGTCTGTGTTAGGCGGGGCGTGGCTGTGCAGAGGGATCTGCGTTGGGTTAGGAGGGGTGTGGCTGTGCAGGTGGTTTTTGGGAGGTGGTTCGATGGTGGAGGGTTGGGTGGTTGCAGCTATGTTGCTTCTCAGTTGTATTACAGAGTCCATTGATTCCGGCGCCAATCCCGCAGTGGGTGTTCTTGGTAGTTCGGCGGCGGTTTATCTCGGCAGGTCTATGAATTCCGTTGGACCTTCTTCAACCTCTCATCCTTTAACCTTACGGGAGGGTGCCGGATTTCGTGCTGATAACACAATTCTGCGGAAGGAGAACAAGTTCCTTTTGGTGACTAAGGTTCTCACTGATGAAGTTCTTAGGCAGGATGACTTCATTCGCCAGATGACCAGATTATGGAAGTTTGCTAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.73

Weight (kDa)

8.43

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 2 cut(s) 144, 288
Acc65I GGTACC 1 cut(s) 66
AccB1I GGYRCC 3 cut(s) 66, 245, 356
AccB7I CCANNNNNTGG 1 cut(s) 477
AciI CCGC 8 cut(s) 5, 48, 80, 99, 255, 281, 284, 388
AclWI GGATC 2 cut(s) 46, 128
AcsI RAATTY 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 76, 260, 477
AgsI TTSAA 1 cut(s) 327
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 3 cut(s) 11, 61, 203
AluI AGCT 3 cut(s) 11, 61, 203
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 2 cut(s) 46, 128
ApeKI GCWGC 2 cut(s) 8, 200
ApoI RAATTY 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 20
BanI GGYRCC 3 cut(s) 66, 245, 356
BanII GRGCYC 2 cut(s) 18, 63
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 20, 212
BccI CCATC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 144, 288
BisI GCNGC 4 cut(s) 6, 9, 201, 282
BlsI GCNGC 4 cut(s) 7, 10, 202, 283
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 4 cut(s) 17, 68, 247, 358
BpmI CTGGAG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 260, 477
Bse21I CCTNAGG 1 cut(s) 20
BseGI GGATG 3 cut(s) 30, 334, 454
BseLI CCNNNNNNNGG 3 cut(s) 76, 260, 477
BseMII CTCAG 2 cut(s) 34, 229
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 20, 212
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 2 cut(s) 133, 172
BshNI GGYRCC 3 cut(s) 66, 245, 356
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 243, 360
BslI CCNNNNNNNGG 3 cut(s) 76, 260, 477
Bsp1286I GDGCHC 2 cut(s) 18, 63
Bsp143I GATC 2 cut(s) 38, 120
BspACI CCGC 8 cut(s) 5, 48, 80, 99, 255, 281, 284, 388
BspCNI CTCAG 2 cut(s) 33, 228
BspLI GGNNCC 4 cut(s) 17, 68, 247, 358
BspMI ACCTGC 2 cut(s) 144, 288
BspPI GGATC 2 cut(s) 46, 128
BspT107I GGYRCC 3 cut(s) 66, 245, 356
BssMI GATC 2 cut(s) 38, 120
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 246
BstDEI CTNAG 4 cut(s) 20, 215, 417, 440
BstF5I GGATG 3 cut(s) 30, 334, 454
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 41, 123
BstMBI GATC 2 cut(s) 38, 120
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 20, 212
BstX2I RGATCY 2 cut(s) 38, 120
BstYI RGATCY 2 cut(s) 38, 120
Bsu36I CCTNAGG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 30, 334, 454
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 426
BveI ACCTGC 2 cut(s) 144, 288
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 6 cut(s) 11, 16, 61, 109, 148, 203
CviKI_1 RGCY 6 cut(s) 11, 16, 61, 109, 148, 203
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 4 cut(s) 20, 215, 417, 440
DinI GGCGCC 1 cut(s) 247
DpnI GATC 2 cut(s) 40, 122
DpnII GATC 2 cut(s) 38, 120
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 18, 63
Eco47I GGWCC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 61
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 307
EcoT38I GRGCYC 2 cut(s) 18, 63
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
FaiI YATR 4 cut(s) 86, 206, 305, 478
FauI CCCGC 4 cut(s) 41, 73, 92, 262
Fnu4HI GCNGC 4 cut(s) 6, 9, 201, 282
FokI GGATG 3 cut(s) 37, 321, 461
FriOI GRGCYC 2 cut(s) 18, 63
Fsp4HI GCNGC 4 cut(s) 6, 9, 201, 282
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 6, 9, 201, 282
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 249
HapII CCGG 2 cut(s) 243, 360
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 230, 239
HpaII CCGG 2 cut(s) 243, 360
HphI GGTGA 1 cut(s) 424
Hpy188III TCNNGA 3 cut(s) 22, 32, 42
HpyAV CCTTC 2 cut(s) 330, 385
HpyCH4V TGCA 3 cut(s) 114, 153, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 20, 215, 417, 440
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 1 cut(s) 246
KasI GGCGCC 1 cut(s) 245
KpnI GGTACC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 38, 120
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 2 cut(s) 20, 212
MaeIII GTNAC 1 cut(s) 412
MalI GATC 2 cut(s) 40, 122
MboI GATC 2 cut(s) 38, 120
MboII GAAGA 1 cut(s) 315
MflI RGATCY 2 cut(s) 38, 120
MhlI GDGCHC 2 cut(s) 18, 63
MluCI AATT 2 cut(s) 307, 381
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 9 cut(s) 28, 29, 38, 110, 131, 161, 178, 340, 346
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 243, 360
MwoI GCNNNNNNNGC 1 cut(s) 254
NarI GGCGCC 1 cut(s) 246
NdeII GATC 2 cut(s) 38, 120
NlaIV GGNNCC 4 cut(s) 17, 68, 247, 358
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 4 cut(s) 7, 10, 202, 283
PleI GAGTC 1 cut(s) 238
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 4 cut(s) 17, 68, 247, 358
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 2 cut(s) 38, 120
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 4 cut(s) 6, 9, 201, 282
Sau3AI GATC 2 cut(s) 38, 120
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 2 cut(s) 18, 63
SfoI GGCGCC 1 cut(s) 247
SinI GGWCC 1 cut(s) 317
Sse9I AATT 2 cut(s) 307, 381
SsiI CCGC 8 cut(s) 5, 48, 80, 99, 255, 281, 284, 388
SspDI GGCGCC 1 cut(s) 245
SstI GAGCTC 1 cut(s) 63
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 307, 381
TauI GCSGC 2 cut(s) 8, 284
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 264, 433
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 8, 200
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 320, 445, 447
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 2 cut(s) 264, 433
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.