Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

16096495 .. 16097702

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCAGCGTGGGTTTCTTTTTATCGCAATCGGCCTCCTCCCTACGAATTCAAAGACAACAAAGACCGTGAGAAGGACATACTTCTCATTAAATTCCTTATTGGTATACCCTTCGTCTTGTTATTAAGCTTCGCCGTGTACCAAAAGTTCTTGGTATACAAGATGAATCTTCAAAGACCGCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTCGTCCCTCTATCATGGAGATAAGAAAGACGTGCTCTACTGGGATGGGAGATCCAAGACGACATGCATTATCTCAATCGCAACCACGAGGTTGTGTAAGCCATTCTTCCTCGACAAAGGAGGGAACCGGACCACCCTTGTCAATTTCAAACTCGCAGTAGTGAATAAGAACGTCGGCTGTGGCTTGGCGAAGGAGATCTCAGAGGGAGCGGCTCGTGGTGGCAAAGTCAAATTCGGGCTGCGCATCAGGCTTTTCTTTTATTATAGAACTAGGAATTGGGGCCTGCGAGTTCTCCATGATGTTAGCTTCTTCTGTAATCGGGTTGAATTCGTGTTCCCTCCGACTAATAACCATGGCACTGGAATTTTCAAAGGTCACTCGCGGGAATGCCCAGATTCTTGCTCAACTTTGGGAGATTATTGTATGCGTAGTCGGTCTGTGACATCAAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

255

Amino Acids

28.87

Weight (kDa)

9.59

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	106, 156
AccII	CGCG	1 cut(s)	694
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	5 cut(s)	179, 198, 267, 521, 694
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	5 cut(s)	47, 92, 542, 638, 675
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	5 cut(s)	52, 173, 460, 638, 682
AjiI	CACGTC	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AluBI	AGCT	2 cut(s)	129, 618
AluI	AGCT	2 cut(s)	129, 618
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	209
AoxI	GGCC	2 cut(s)	32, 592
ApeKI	GCWGC	2 cut(s)	228, 550
ApoI	RAATTY	5 cut(s)	47, 92, 542, 638, 675
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	441, 592
AsuHPI	GGTGA	2 cut(s)	214, 247
AvaII	GGWCC	1 cut(s)	441
BauI	CACGAG	2 cut(s)	397, 525
BbrPI	CACGTG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	215, 537
BccI	CCATC	2 cut(s)	314, 350
BceAI	ACGGC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	4 cut(s)	229, 267, 522, 551
BlsI	GCNGC	4 cut(s)	230, 268, 523, 552
Bme18I	GGWCC	1 cut(s)	441
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	441, 592
BmiI	GGNNCC	2 cut(s)	437, 593
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	286, 664
BsaWI	WCCGGW	2 cut(s)	209, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	232, 356, 676
BseAI	TCCGGA	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	286, 664
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	3 cut(s)	232, 356, 676
BseRI	GAGGAG	2 cut(s)	27, 251
BseXI	GCAGC	2 cut(s)	215, 537
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	2 cut(s)	34, 594
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	210, 225, 439
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	34, 594
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	189, 362, 507
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	5 cut(s)	179, 198, 267, 521, 694
BspANI	GGCC	2 cut(s)	34, 594
BspCNI	CTCAG	1 cut(s)	524
BspEI	TCCGGA	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	437, 593
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	232, 356, 676
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	286, 664
BssMI	GATC	3 cut(s)	189, 362, 507
BssNAI	GTATAC	2 cut(s)	107, 157
BssSI	CACGAG	2 cut(s)	397, 525
BssT1I	CCWWGG	1 cut(s)	664
Bst1107I	GTATAC	2 cut(s)	107, 157
Bst2BI	CACGAG	2 cut(s)	397, 525
Bst4CI	ACNGT	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	1 cut(s)	511
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	3 cut(s)	192, 365, 510
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	189, 362, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 559
BstNSI	RCATGY	1 cut(s)	378
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	215, 537
BstX2I	RGATCY	2 cut(s)	362, 507
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	2 cut(s)	362, 507
BstZ17I	GTATAC	2 cut(s)	107, 157
BsuRI	GGCC	2 cut(s)	34, 594
BtgI	CCRYGG	1 cut(s)	664
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	596
CfoI	GCGC	1 cut(s)	555
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	441, 592
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	326, 375, 608, 665
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	3 cut(s)	191, 364, 509
DpnII	GATC	3 cut(s)	189, 362, 507
Eco130I	CCWWGG	1 cut(s)	664
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRI	GAATTC	2 cut(s)	47, 638
EcoT14I	CCWWGG	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	4 cut(s)	329, 378, 611, 668
FaiI	YATR	9 cut(s)	80, 107, 157, 327, 376, 576, 609, 666, 737
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	325, 374, 607, 664
FauI	CCCGC	1 cut(s)	687
FblI	GTMKAC	2 cut(s)	106, 156
Fnu4HI	GCNGC	4 cut(s)	229, 267, 522, 551
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	229, 267, 522, 551
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	4 cut(s)	229, 267, 522, 551
HaeIII	GGCC	2 cut(s)	34, 594
HapII	CCGG	3 cut(s)	210, 225, 439
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	329, 378, 611, 668
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	2 cut(s)	237, 295
HindII	GTYRAC	2 cut(s)	237, 295
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	4 cut(s)	166, 194, 311, 707
HpaI	GTTAAC	1 cut(s)	237
HpaII	CCGG	3 cut(s)	210, 225, 439
HphI	GGTGA	2 cut(s)	214, 247
Hpy166II	GTNNAC	5 cut(s)	107, 139, 157, 237, 295
Hpy188I	TCNGA	4 cut(s)	189, 303, 514, 654
Hpy188III	TCNNGA	1 cut(s)	210
Hpy8I	GTNNAC	5 cut(s)	107, 139, 157, 237, 295
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	67, 121, 496
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	3 cut(s)	245, 342, 483
HpyCH4V	TGCA	2 cut(s)	283, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 559
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	3 cut(s)	245, 342, 483
Hsp92II	CATG	4 cut(s)	329, 378, 611, 668
HspAI	GCGC	1 cut(s)	553
Kpn2I	TCCGGA	1 cut(s)	209
KspAI	GTTAAC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	189, 362, 507
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	2 cut(s)	215, 537
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	3 cut(s)	245, 342, 483
MaeIII	GTNAC	3 cut(s)	220, 686, 751
MalI	GATC	3 cut(s)	191, 364, 509
MbiI	CCGCTC	1 cut(s)	521
MboI	GATC	3 cut(s)	189, 362, 507
MboII	GAAGA	3 cut(s)	161, 409, 613
MflI	RGATCY	2 cut(s)	362, 507
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
MlyI	GAGTC	2 cut(s)	188, 305
MmeI	TCCRAC	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	209
MseI	TTAA	3 cut(s)	90, 125, 236
MspI	CCGG	3 cut(s)	210, 225, 439
Mva1269I	GAATGC	1 cut(s)	704
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	2 cut(s)	225, 559
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	3 cut(s)	189, 362, 507
NlaIII	CATG	4 cut(s)	329, 378, 611, 668
NlaIV	GGNNCC	2 cut(s)	437, 593
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	220, 686, 751
NsbI	TGCGCA	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	378
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	166, 707
PkrI	GCNGC	4 cut(s)	230, 268, 523, 552
PleI	GAGTC	2 cut(s)	188, 305
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	188, 305
Ppu21I	YACGTR	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	437, 593
PspPI	GGNCC	2 cut(s)	441, 592
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PsuI	RGATCY	2 cut(s)	362, 507
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	90, 125, 236
SatI	GCNGC	4 cut(s)	229, 267, 522, 551
Sau3AI	GATC	3 cut(s)	189, 362, 507
Sau96I	GGNCC	2 cut(s)	441, 592
SchI	GAGTC	2 cut(s)	188, 305
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	9 cut(s)	131, 248, 282, 288, 345, 404, 486, 620, 688
SfaNI	GCATC	1 cut(s)	564
SinI	GGWCC	1 cut(s)	441
Sse9I	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
SsiI	CCGC	5 cut(s)	179, 198, 267, 521, 694
SspMI	CTAG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	3 cut(s)	248, 345, 486
TaqI	TCGA	3 cut(s)	192, 309, 423
TaqII	GACCGA	2 cut(s)	193, 735
TasI	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
TauI	GCSGC	2 cut(s)	269, 524
TfiI	GAWTC	2 cut(s)	166, 707
Tru1I	TTAA	3 cut(s)	90, 125, 236
Tru9I	TTAA	3 cut(s)	90, 125, 236
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	3 cut(s)	220, 686, 751
TseI	GCWGC	2 cut(s)	228, 550
Tsp45I	GTSAC	3 cut(s)	220, 686, 751
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	5 cut(s)	47, 92, 542, 638, 675
XceI	RCATGY	1 cut(s)	378
XmiI	GTMKAC	2 cut(s)	106, 156
XspI	CTAG	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.