Rh3AG168600

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002155
Physical Location & Seq
Reverse (-)
15594673 .. 15600093
5421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG168600.1

Sequence Viewer

Length: 447 bp
ATGAATCCTCAAAGACCCGAGTTTCAGATCAACTCCGCATCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAATCCTAACGTGCACCTCGGCGTTGACTATCTGGCCATCGACTCGTCCCTCTATTATGGAGACAAGAAAGACGTGCTGTACTGGGAAGGGATAGTGAGTAAGGACGTCGACTGTGTCTTGGCGAAGGAGATCTCAGAGGAAGCGGCTCGTGGTGGAAAAGTCAAATTTGGGCTGGGCATCAGTCTTTTGTTTGATTATAGAACCAAGTTTTGGATGCTGCAAGGTCCCGGTGAAGTTAGCTTCTTCTGTAATCGGGTCGAATTTGTGTTCGCCCCGAGTAATAATCATGGCACTGGAATTTTCAAAGAAATACGGTGGTTGTTGACGAGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

148

Amino Acids

16.5

Weight (kDa)

5.7

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 318
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 3 cut(s) 36, 105, 251
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 3 cut(s) 272, 368, 405
AcvI CACGTG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 49, 162
Alw44I GTGCAC 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 17, 382
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 66, 325
ApoI RAATTY 3 cut(s) 272, 368, 405
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 52, 85, 350
AvaI CYCGRG 2 cut(s) 17, 382
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 143
BauI CACGAG 1 cut(s) 255
BbrPI CACGTG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 53, 312
BccI CCATC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 49, 162
BglII AGATCT 1 cut(s) 237
BisI GCNGC 4 cut(s) 67, 105, 252, 326
BlsI GCNGC 4 cut(s) 68, 106, 253, 327
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 2 cut(s) 17, 382
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 3 cut(s) 47, 294, 312
BmuI ACTGGG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 70, 194, 406
BseAI TCCGGA 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 70, 194, 406
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 53, 312
BseYI CCCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 17, 382
BsiSI CCGG 3 cut(s) 48, 63, 336
BslFI GGGAC 2 cut(s) 139, 318
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 49, 162
BsmFI GGGAC 2 cut(s) 139, 318
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 49
BsoBI CYCGRG 2 cut(s) 17, 382
Bsp1286I GDGCHC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 27, 237
BspACI CCGC 3 cut(s) 36, 105, 251
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 3 cut(s) 70, 194, 406
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 27, 237
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 221, 423
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 30, 240
BstMAI GTCTC 2 cut(s) 49, 162
BstMBI GATC 2 cut(s) 27, 237
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 53, 312
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 143
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 395
CviJI RGCY 5 cut(s) 66, 143, 254, 280, 348
CviKI_1 RGCY 5 cut(s) 66, 143, 254, 280, 348
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 29, 239
DpnII GATC 2 cut(s) 27, 237
EaeI YGGCCR 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 84
Eco88I CYCGRG 2 cut(s) 17, 382
EcoO109I RGGNCCY 1 cut(s) 332
FaeI CATG 1 cut(s) 398
FaiI YATR 3 cut(s) 165, 306, 396
FaqI GGGAC 2 cut(s) 139, 318
FatI CATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 67, 105, 252, 326
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 4 cut(s) 67, 105, 252, 326
GluI GCNGC 4 cut(s) 67, 105, 252, 326
GsaI CCCAGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 48, 63, 336
HgaI GACGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 398
HincII GTYRAC 4 cut(s) 75, 133, 217, 432
HindII GTYRAC 4 cut(s) 75, 133, 217, 432
HinfI GANTC 2 cut(s) 4, 149
HpaI GTTAAC 1 cut(s) 75
HpaII CCGG 3 cut(s) 48, 63, 336
HphI GGTGA 3 cut(s) 52, 85, 350
Hpy166II GTNNAC 5 cut(s) 75, 121, 133, 217, 432
Hpy188I TCNGA 2 cut(s) 27, 244
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 5 cut(s) 75, 121, 133, 217, 432
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 188, 226
HpyCH4III ACNGT 2 cut(s) 221, 423
HpyCH4IV ACGT 4 cut(s) 83, 117, 180, 213
HpyCH4V TGCA 2 cut(s) 121, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 4 cut(s) 83, 117, 180, 213
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 27, 237
LpnPI CCDG 8 cut(s) 61, 76, 83, 125, 175, 266, 349, 387
Lsp1109I GCAGC 2 cut(s) 53, 312
LweI GCATC 3 cut(s) 47, 294, 312
MaeII ACGT 4 cut(s) 83, 117, 180, 213
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 29, 239
MboI GATC 2 cut(s) 27, 237
MboII GAAGA 1 cut(s) 343
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 272, 368, 405
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 18, 107, 110, 134, 167, 238
Mox20I TGGCCA 1 cut(s) 143
MroI TCCGGA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 3 cut(s) 48, 63, 336
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 27, 237
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 4 cut(s) 68, 106, 253, 327
PleI GAGTC 1 cut(s) 143
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 84
PpuMI RGGWCCY 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 332
PspCI CACGTG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 332
PspPPI RGGWCCY 1 cut(s) 332
PsuI RGATCY 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 4 cut(s) 67, 105, 252, 326
Sau3AI GATC 2 cut(s) 27, 237
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 86, 120, 126, 183, 216, 334, 350
SfaNI GCATC 3 cut(s) 47, 294, 312
SinI GGWCC 1 cut(s) 332
Sse9I AATT 3 cut(s) 272, 368, 405
SsiI CCGC 3 cut(s) 36, 105, 251
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 221, 423
TaiI ACGT 4 cut(s) 86, 120, 183, 216
TaqI TCGA 3 cut(s) 147, 216, 366
TaqII GACCGA 1 cut(s) 31
TasI AATT 3 cut(s) 272, 368, 405
TatI WGTACW 1 cut(s) 186
TauI GCSGC 2 cut(s) 107, 254
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 66, 325
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 406
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 318
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 3 cut(s) 272, 368, 405
XmiI GTMKAC 1 cut(s) 216
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.