Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

32860295 .. 32864862

Gene Structure 4568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATCTTTTGTTGTGTGCTATTTTCTTTCGTGTTCATTGGAATCTTATTAATATACTCCTTCGTCCTTTATATCGAATCATCGCTATTGGCGGAGGAGTCCGAGCTTGCATATCCCCATTTTCGGATCGACTCAGCTACCGTGTTCGAACTGGAGACGACTGACTACGATTTGAGTGCGACATGGAACTTTACGCTCGTCGCTTCATACCCTAATCATGGGAAGCTAGCCATTTTCGACCGTGTCCGAGCATTCGTCTACTACTGCCCCAAAGGCTTCATGTATTATGGGGATAAGTACAAGTACTCTCTCGCAAAGAAGCAGTTGCCTCCTTTCTTTATGTACGGAGGGAACGAAACCCGGTTTGATTTCAAGGTCGGAGTTATTGGGGCTCCTGTCAGCCCTGACGAAGCCAAACAAATCTCGGTGGGGAAGAATGTGGTTGGGTCAGTGAAATTTGGGTTGATGCTGCTGACTCCGCATAAAAACACGACCGATGACTGGAACGGGTATATTCTGTTTTGTGAACCCATTGAATTCATATTTTCCTCCCGTACTAATAACACCGGAGTTTTTACAGAGCTTGGTCTGCCTGGGCCCTACCAAGAACAGTTGTGCGAGTCCCGTTGGCTGCAGCAGAACCACGGCGAGGTCGGCTCTGACGACCTTTTTGAACTCTTGGCGCAGTTTCTCGACCGAGACCTTGTCCCTTCTTGCCGTGCTAGTTGGTGTGATCGAGATTTTGGGAATGACCTTCACGTTGGAGCTGTATTTGACGTTGCGGGTGGTGGTGGCGATGATGACGTCATCGGGGGAGATGAGGTTGAAAATGAAATAGACGTCCTCGGGGTATTCAGGGAAGATCTTCACTATCCCTCGCTGATTCACAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

299

Amino Acids

33.63

Weight (kDa)

4.54

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	807, 843
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	3 cut(s)	92, 479, 782
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	455, 536
AcyI	GRCGYC	2 cut(s)	804, 840
AfaI	GTAC	4 cut(s)	299, 305, 344, 556
AfiI	CCNNNNNNNGG	4 cut(s)	123, 218, 501, 649
AgsI	TTSAA	4 cut(s)	373, 536, 674, 827
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	5 cut(s)	106, 137, 226, 583, 767
AluI	AGCT	5 cut(s)	106, 137, 226, 583, 767
Alw26I	GTCTC	2 cut(s)	149, 693
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	596
ApaI	GGGCCC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	469, 631, 634
ApoI	RAATTY	2 cut(s)	455, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AseI	ATTAAT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	596, 597
AsuC2I	CCSGG	1 cut(s)	361
AsuII	TTCGAA	1 cut(s)	147
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	394, 600
BbvI	GCAGC	3 cut(s)	456, 618, 646
BceAI	ACGGC	2 cut(s)	661, 702
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	149, 693
BfaI	CTAG	2 cut(s)	227, 723
BfmI	CTRYAG	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	3 cut(s)	470, 632, 635
BlsI	GCNGC	3 cut(s)	471, 633, 636
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	361, 594
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	596, 597
BmiI	GGNNCC	2 cut(s)	393, 598
BmrFI	CCNGG	2 cut(s)	361, 594
BmsI	GCATC	1 cut(s)	456
BmtI	GCTAGC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	2 cut(s)	804, 840
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	593, 643, 844
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 218, 501, 649
Bse1I	ACTGG	2 cut(s)	156, 506
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	593, 643, 844
BseLI	CCNNNNNNNGG	4 cut(s)	123, 218, 501, 649
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	156, 506
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	456, 618, 646
Bsh1285I	CGRYCG	3 cut(s)	241, 495, 697
BshFI	GGCC	1 cut(s)	598
BsiEI	CGRYCG	3 cut(s)	241, 495, 697
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	2 cut(s)	361, 567
BslFI	GGGAC	2 cut(s)	607, 692
BslI	CCNNNNNNNGG	4 cut(s)	123, 218, 501, 649
BsmAI	GTCTC	2 cut(s)	149, 693
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	607, 692
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	598
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	1 cut(s)	845
Bsp119I	TTCGAA	1 cut(s)	147
Bsp120I	GGGCCC	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	394, 600
Bsp143I	GATC	4 cut(s)	3, 126, 733, 862
BspACI	CCGC	3 cut(s)	92, 479, 782
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	393, 598
BspMAI	CTGCAG	1 cut(s)	636
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	156, 506
BssECI	CCNNGG	3 cut(s)	593, 643, 844
BssMI	GATC	4 cut(s)	3, 126, 733, 862
BssNI	GRCGYC	2 cut(s)	804, 840
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	142, 242, 612
BstACI	GRCGYC	2 cut(s)	804, 840
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	108, 228
BstDEI	CTNAG	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	4 cut(s)	6, 129, 736, 865
BstMAI	GTCTC	2 cut(s)	149, 693
BstMBI	GATC	4 cut(s)	3, 126, 733, 862
BstMCI	CGRYCG	3 cut(s)	241, 495, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 478, 589, 654
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	359, 592
BstSFI	CTRYAG	1 cut(s)	632
BstSLI	GKGCMC	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	456, 618, 646
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	643
BtgZI	GCGATG	2 cut(s)	66, 810
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	108, 228
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	596, 597
Csp6I	GTAC	4 cut(s)	298, 304, 343, 555
CviAII	CATG	3 cut(s)	183, 218, 280
CviQI	GTAC	4 cut(s)	298, 304, 343, 555
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	4 cut(s)	5, 128, 735, 864
DpnII	GATC	4 cut(s)	3, 126, 733, 862
EciI	GGCGGA	1 cut(s)	107
Eco24I	GRGCYC	2 cut(s)	394, 600
Eco31I	GGTCTC	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	394, 600
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	3 cut(s)	186, 221, 283
FaqI	GGGAC	2 cut(s)	607, 692
FatI	CATG	3 cut(s)	182, 217, 279
FauI	CCCGC	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	470, 632, 635
FriOI	GRGCYC	2 cut(s)	394, 600
Fsp4HI	GCNGC	3 cut(s)	470, 632, 635
FspBI	CTAG	2 cut(s)	227, 723
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	3 cut(s)	470, 632, 635
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	2 cut(s)	361, 567
HhaI	GCGC	1 cut(s)	685
Hin1I	GRCGYC	2 cut(s)	804, 840
Hin1II	CATG	3 cut(s)	186, 221, 283
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	7 cut(s)	42, 77, 98, 131, 475, 620, 883
HpaII	CCGG	2 cut(s)	361, 567
Hpy166II	GTNNAC	2 cut(s)	259, 527
Hpy188I	TCNGA	5 cut(s)	103, 126, 248, 380, 661
Hpy188III	TCNNGA	2 cut(s)	692, 737
Hpy8I	GTNNAC	2 cut(s)	259, 527
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	70, 720, 764
HpyCH4III	ACNGT	3 cut(s)	142, 242, 612
HpyCH4IV	ACGT	4 cut(s)	759, 777, 804, 840
HpyCH4V	TGCA	2 cut(s)	110, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 478, 589, 654
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	4 cut(s)	759, 777, 804, 840
Hsp92I	GRCGYC	2 cut(s)	804, 840
Hsp92II	CATG	3 cut(s)	186, 221, 283
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	4 cut(s)	3, 126, 733, 862
LmnI	GCTCC	2 cut(s)	397, 764
LpnPI	CCDG	9 cut(s)	137, 374, 408, 417, 487, 579, 580, 606, 841
Lsp1109I	GCAGC	3 cut(s)	456, 618, 646
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	2 cut(s)	227, 723
MaeII	ACGT	4 cut(s)	759, 777, 804, 840
MalI	GATC	4 cut(s)	5, 128, 735, 864
MboI	GATC	4 cut(s)	3, 126, 733, 862
MboII	GAAGA	3 cut(s)	445, 857, 872
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	394, 600
MluCI	AATT	3 cut(s)	455, 536, 892
MlyI	GAGTC	4 cut(s)	107, 125, 469, 629
MmeI	TCCRAC	2 cut(s)	358, 742
MnlI	CCTC	8 cut(s)	88, 339, 341, 559, 643, 814, 854, 886
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	2 cut(s)	50, 895
MspI	CCGG	2 cut(s)	361, 567
MspR9I	CCNGG	2 cut(s)	361, 594
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	4 cut(s)	273, 478, 589, 654
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	3, 126, 733, 862
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	186, 221, 283
NlaIV	GGNNCC	2 cut(s)	393, 598
NspV	TTCGAA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 660
PctI	GAATGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	3 cut(s)	42, 77, 883
PflFI	GACNNNGTC	2 cut(s)	242, 704
PkrI	GCNGC	3 cut(s)	471, 633, 636
PleI	GAGTC	4 cut(s)	106, 125, 469, 628
PpsI	GAGTC	4 cut(s)	106, 125, 469, 628
PshBI	ATTAAT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	393, 598
PspOMI	GGGCCC	1 cut(s)	596
PspPI	GGNCC	2 cut(s)	596, 597
PstI	CTGCAG	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	862
PsyI	GACNNNGTC	2 cut(s)	242, 704
RsaI	GTAC	4 cut(s)	299, 305, 344, 556
RsaNI	GTAC	4 cut(s)	298, 304, 343, 555
SaqAI	TTAA	2 cut(s)	50, 895
SatI	GCNGC	3 cut(s)	470, 632, 635
Sau3AI	GATC	4 cut(s)	3, 126, 733, 862
Sau96I	GGNCC	2 cut(s)	596, 597
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	4 cut(s)	107, 125, 469, 629
ScrFI	CCNGG	2 cut(s)	361, 594
SduI	GDGCHC	2 cut(s)	394, 600
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	632
SfuI	TTCGAA	1 cut(s)	147
Sse9I	AATT	3 cut(s)	455, 536, 892
SsiI	CCGC	3 cut(s)	92, 479, 782
SspMI	CTAG	2 cut(s)	227, 723
StyD4I	CCNGG	2 cut(s)	359, 592
TaaI	ACNGT	3 cut(s)	142, 242, 612
TaiI	ACGT	4 cut(s)	762, 780, 807, 843
TaqI	TCGA	6 cut(s)	75, 129, 147, 237, 693, 736
TaqII	GACCGA	2 cut(s)	509, 711
TasI	AATT	3 cut(s)	455, 536, 892
TatI	WGTACW	2 cut(s)	297, 303
TfiI	GAWTC	3 cut(s)	42, 77, 883
Tru1I	TTAA	2 cut(s)	50, 895
Tru9I	TTAA	2 cut(s)	50, 895
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	3 cut(s)	469, 631, 634
TspDTI	ATGAA	5 cut(s)	25, 195, 268, 529, 846
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	456
Tth111I	GACNNNGTC	2 cut(s)	242, 704
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	2 cut(s)	455, 536
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	2 cut(s)	227, 723
ZraI	GACGTC	2 cut(s)	805, 841
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.