Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

16237279 .. 16237980

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG183000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAAAAAATCGAGGCACTCCGAGCTGTTCTTGATCCTCTTCTTCCGTCCTTCAAAGAATCAGACGGATATTGGCGAAGATGTACTCGGATGATGGCTGGTTGTGCGCTTTTGTCTTTCGTGTTCATTGGAATCTTACTAATATACTCCCTCTTCCTGTTTGTCCGATCAGCGGTGTGGACGGACGATGTGTCCGAGCTTGCATATCCCCAGTTCCGGATCGACTCAGCTGCCGTGTTCGAACTGGAGACGACTGACTACGATTTGAGTGCGACATGGAACTTTACGCTCGTCGCTTCATACCCTAATTATGGAAAGCTAGCTATTTTCGACCGTGTCCGAGCATTCGTCTACTACTGCCCCAAAGACTACATGTATTTTGGGGATAAGTACGAGTACTCCCTCGCAAAGAAGCAGTTGCCTCCTTTCTTTATGTACGGAGGGAACGAAACCCGGATTGATTTCAGGGTCGGAGTAATTGGGGCTCCTGTCACCCCTGACGAAGCCAAGCAAATCTCGGTGGGGAAGACTGTGGTTGGGTCGGTGAAATTTGGGTTGATGCTGGTGACTCCGCGTAAAAACACGACCGATGACACGAACGGGTTTATTCGGTTTTGTGACCCCATTGAATTCATATTTTCCTCCCCTACTAATAACACCGGAGTTTTTACAGGTCAGTCAAGGGCATGCCATTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

233

Amino Acids

26.49

Weight (kDa)

6.6

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	2 cut(s)	173, 572
AclWI	GGATC	2 cut(s)	29, 227
AcsI	RAATTY	2 cut(s)	548, 629
AfaI	GTAC	4 cut(s)	85, 392, 398, 437
AfiI	CCNNNNNNNGG	3 cut(s)	172, 216, 311
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	55, 629
AhdI	GACNNNNNGTC	1 cut(s)	190
AluBI	AGCT	5 cut(s)	26, 199, 230, 319, 323
AluI	AGCT	5 cut(s)	26, 199, 230, 319, 323
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	29, 227
Aor13HI	TCCGGA	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	548, 629
AspLEI	GCGC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	484, 556, 577
AsuII	TTCGAA	1 cut(s)	240
AsuNHI	GCTAGC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 251, 285
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	320
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	454
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	549
BmtI	GCTAGC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	454
BsaWI	WCCGGW	2 cut(s)	216, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 216, 311
Bse1I	ACTGG	2 cut(s)	211, 249
BseAI	TCCGGA	1 cut(s)	216
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	172, 216, 311
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	211, 249
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	574
Bsh1285I	CGRYCG	2 cut(s)	334, 588
BsiEI	CGRYCG	2 cut(s)	334, 588
BsiSI	CCGG	3 cut(s)	217, 454, 660
BslI	CCNNNNNNNGG	3 cut(s)	172, 216, 311
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	34, 167, 219
BspACI	CCGC	2 cut(s)	173, 572
BspCNI	CTCAG	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	486
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	29, 227
BspT104I	TTCGAA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	211, 249
BssMI	GATC	3 cut(s)	34, 167, 219
Bst4CI	ACNGT	2 cut(s)	335, 532
Bst6I	CTCTTC	2 cut(s)	45, 158
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	201, 321, 688
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	37, 170, 222
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	34, 167, 219
BstMCI	CGRYCG	2 cut(s)	334, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 104
BstNSI	RCATGY	2 cut(s)	376, 690
BstSCI	CCNGG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	201, 321, 688
CfoI	GCGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	84, 391, 397, 436
CviAII	CATG	3 cut(s)	276, 373, 687
CviJI	RGCY	8 cut(s)	26, 98, 199, 230, 319, 323, 485, 506
CviKI_1	RGCY	8 cut(s)	26, 98, 199, 230, 319, 323, 485, 506
CviQI	GTAC	4 cut(s)	84, 391, 397, 436
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	3 cut(s)	36, 169, 221
DpnII	GATC	3 cut(s)	34, 167, 219
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	45, 158
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	2 cut(s)	45, 158
Eco24I	GRGCYC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	279, 376, 690
FaiI	YATR	9 cut(s)	145, 205, 277, 301, 312, 374, 434, 635, 688
FatI	CATG	3 cut(s)	275, 372, 686
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	266
HapII	CCGG	3 cut(s)	217, 454, 660
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	279, 376, 690
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	4 cut(s)	59, 132, 224, 568
HpaII	CCGG	3 cut(s)	217, 454, 660
HphI	GGTGA	3 cut(s)	484, 556, 577
Hpy166II	GTNNAC	2 cut(s)	180, 352
Hpy188I	TCNGA	7 cut(s)	23, 64, 90, 167, 196, 341, 473
Hpy188III	TCNNGA	2 cut(s)	32, 217
Hpy8I	GTNNAC	2 cut(s)	180, 352
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	335, 532
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 104
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	279, 376, 690
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	34, 167, 219
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	490, 565, 617
MalI	GATC	3 cut(s)	36, 169, 221
MboI	GATC	3 cut(s)	34, 167, 219
MboII	GAAGA	5 cut(s)	32, 35, 90, 145, 538
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	307, 477, 548, 629
MlyI	GAGTC	2 cut(s)	218, 562
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	7, 48, 161, 413, 432, 434, 652
MroI	TCCGGA	1 cut(s)	216
MseI	TTAA	1 cut(s)	700
MspA1I	CMGCKG	2 cut(s)	173, 230
MspI	CCGG	3 cut(s)	217, 454, 660
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	344
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	23, 104
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	34, 167, 219
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	279, 376, 690
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	3 cut(s)	490, 565, 617
NspI	RCATGY	2 cut(s)	376, 690
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	690
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 444
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	59, 132
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	218, 562
PpsI	GAGTC	2 cut(s)	218, 562
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	486
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	4 cut(s)	85, 392, 398, 437
RsaNI	GTAC	4 cut(s)	84, 391, 397, 436
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	34, 167, 219
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	218, 562
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	6 cut(s)	28, 201, 232, 321, 325, 676
SfaNI	GCATC	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	240
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	4 cut(s)	307, 477, 548, 629
SsiI	CCGC	2 cut(s)	173, 572
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	335, 532
TaqI	TCGA	4 cut(s)	12, 222, 240, 330
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	4 cut(s)	307, 477, 548, 629
TatI	WGTACW	2 cut(s)	83, 396
TfiI	GAWTC	2 cut(s)	59, 132
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TseFI	GTSAC	3 cut(s)	490, 565, 617
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	490, 565, 617
TspDTI	ATGAA	4 cut(s)	17, 115, 288, 622
TspGWI	ACGGA	4 cut(s)	36, 81, 197, 453
Tth111I	GACNNNGTC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	548, 629
XceI	RCATGY	2 cut(s)	376, 690
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.