Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

16060676 .. 16061443

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCAGCGTGGGTTTCTTTTTATCGCAATCGTCCTCCTCCCTACCAATTCAAAGACAACAAAGACCGCGAGAAGGACATACTTCTCATTAAATTCCTTATGGGTATACCCTTCGTCTTGTTATTAAGTTTCGCCGTGTACCAAAAGTTCTTGGTATACAAGATGAATCTTCAAAGACCGCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCGCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTCGTCCCTCTATCAAGGAGACAAGAAAGACTTGCTCTACTGGGATGGGAGATCCAAGACGACATGCATTATCTCAATCGCAACCACGAGGTTGTGTAAGCCATTCTTCCTCGACAAAGGAGGGAACCGGACTACCCTTGTCAATTTCAAACTCGCAGTAGTGAATAAGGACGTCTGCTGTTGCTTGGCGAAGGAGATCTCAGAGGGAGCGGCTCGTGGTGGCAAAGTCAAATTCGGGCTGCGCATCAGGCTTTTCTTTTATTATAGAACTAGGAATTGGGGCCTGCGAGTTCTCCATGATGTTAGCTTCTTCTGTAATCGGGTCGAATTCGTGTTCCCTCCGAATAATAACCATGGCACTGGAATTTTCAAAGGTCACTCGCGGGAATGCCCAGATTCTTGCTCAACTATGGGAGATTATTGTATGCGTAGTCGGTCTGTGACATCAAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

255

Amino Acids

29.03

Weight (kDa)

9.49

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	106, 156
AccII	CGCG	2 cut(s)	69, 694
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	6 cut(s)	67, 179, 198, 267, 521, 694
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	4 cut(s)	92, 542, 638, 675
AcvI	CACGTG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	52, 173, 460, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	571, 603
AluBI	AGCT	1 cut(s)	618
AluI	AGCT	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	211, 324
AlwI	GGATC	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	209
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	228, 550
ApoI	RAATTY	4 cut(s)	92, 542, 638, 675
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	214, 247
BauI	CACGAG	2 cut(s)	397, 525
BbrPI	CACGTG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	215, 537
BccI	CCATC	2 cut(s)	314, 350
BceAI	ACGGC	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	211, 324
BfaI	CTAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	4 cut(s)	229, 267, 522, 551
BlsI	GCNGC	4 cut(s)	230, 268, 523, 552
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	437, 593
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	286, 664
BsaWI	WCCGGW	2 cut(s)	209, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	232, 356, 676
BseAI	TCCGGA	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	286, 664
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	3 cut(s)	232, 356, 676
BseRI	GAGGAG	2 cut(s)	27, 251
BseXI	GCAGC	2 cut(s)	215, 537
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	2 cut(s)	69, 694
BshFI	GGCC	1 cut(s)	594
BsiSI	CCGG	3 cut(s)	210, 225, 439
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	211, 324
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	594
Bso31I	GGTCTC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	189, 362, 507
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	6 cut(s)	67, 179, 198, 267, 521, 694
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	524
BspEI	TCCGGA	1 cut(s)	209
BspFNI	CGCG	2 cut(s)	69, 694
BspLI	GGNNCC	2 cut(s)	437, 593
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	232, 356, 676
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	286, 664
BssMI	GATC	3 cut(s)	189, 362, 507
BssNAI	GTATAC	2 cut(s)	107, 157
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	2 cut(s)	397, 525
BssT1I	CCWWGG	1 cut(s)	664
Bst1107I	GTATAC	2 cut(s)	107, 157
Bst2BI	CACGAG	2 cut(s)	397, 525
BstACI	GRCGYC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	6, 596
BstDEI	CTNAG	1 cut(s)	511
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	2 cut(s)	69, 694
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	3 cut(s)	192, 365, 510
BstMAI	GTCTC	2 cut(s)	211, 324
BstMBI	GATC	3 cut(s)	189, 362, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 559
BstNSI	RCATGY	1 cut(s)	378
BstUI	CGCG	2 cut(s)	69, 694
BstV1I	GCAGC	2 cut(s)	215, 537
BstX2I	RGATCY	2 cut(s)	362, 507
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	2 cut(s)	362, 507
BstZ17I	GTATAC	2 cut(s)	107, 157
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	6, 596
CfoI	GCGC	1 cut(s)	555
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	592
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	375, 608, 665
CviJI	RGCY	7 cut(s)	228, 412, 524, 550, 562, 594, 618
CviKI_1	RGCY	7 cut(s)	228, 412, 524, 550, 562, 594, 618
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	3 cut(s)	191, 364, 509
DpnII	GATC	3 cut(s)	189, 362, 507
Eco130I	CCWWGG	1 cut(s)	664
Eco31I	GGTCTC	1 cut(s)	211
Eco72I	CACGTG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRI	GAATTC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	3 cut(s)	378, 611, 668
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 401, 433
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	374, 607, 664
FauI	CCCGC	1 cut(s)	687
FblI	GTMKAC	2 cut(s)	106, 156
Fnu4HI	GCNGC	4 cut(s)	229, 267, 522, 551
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	229, 267, 522, 551
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	4 cut(s)	229, 267, 522, 551
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	3 cut(s)	210, 225, 439
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	378, 611, 668
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	2 cut(s)	237, 295
HindII	GTYRAC	2 cut(s)	237, 295
HinfI	GANTC	4 cut(s)	166, 194, 311, 707
HpaI	GTTAAC	1 cut(s)	237
HpaII	CCGG	3 cut(s)	210, 225, 439
HphI	GGTGA	2 cut(s)	214, 247
Hpy166II	GTNNAC	5 cut(s)	107, 139, 157, 237, 295
Hpy188I	TCNGA	4 cut(s)	189, 303, 514, 654
Hpy188III	TCNNGA	1 cut(s)	210
Hpy8I	GTNNAC	5 cut(s)	107, 139, 157, 237, 295
HpyAV	CCTTC	3 cut(s)	67, 121, 496
HpyCH4IV	ACGT	2 cut(s)	245, 483
HpyCH4V	TGCA	2 cut(s)	283, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 559
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	2 cut(s)	245, 483
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	378, 611, 668
HspAI	GCGC	1 cut(s)	553
Kpn2I	TCCGGA	1 cut(s)	209
KspAI	GTTAAC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	189, 362, 507
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	2 cut(s)	215, 537
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	2 cut(s)	245, 483
MaeIII	GTNAC	3 cut(s)	220, 686, 751
MalI	GATC	3 cut(s)	191, 364, 509
MbiI	CCGCTC	1 cut(s)	521
MboI	GATC	3 cut(s)	189, 362, 507
MboII	GAAGA	3 cut(s)	161, 409, 613
MflI	RGATCY	2 cut(s)	362, 507
MluCI	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
MlyI	GAGTC	2 cut(s)	188, 305
Mph1103I	ATGCAT	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	209
MseI	TTAA	3 cut(s)	90, 125, 236
MspI	CCGG	3 cut(s)	210, 225, 439
Mva1269I	GAATGC	1 cut(s)	704
MvnI	CGCG	2 cut(s)	69, 694
MwoI	GCNNNNNNNGC	2 cut(s)	225, 559
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	3 cut(s)	189, 362, 507
NlaIII	CATG	3 cut(s)	378, 611, 668
NlaIV	GGNNCC	2 cut(s)	437, 593
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	220, 686, 751
NsbI	TGCGCA	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	378
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	166, 707
PkrI	GCNGC	4 cut(s)	230, 268, 523, 552
PleI	GAGTC	2 cut(s)	188, 305
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	188, 305
Ppu21I	YACGTR	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	437, 593
PspPI	GGNCC	1 cut(s)	592
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PsuI	RGATCY	2 cut(s)	362, 507
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	90, 125, 236
SatI	GCNGC	4 cut(s)	229, 267, 522, 551
Sau3AI	GATC	3 cut(s)	189, 362, 507
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	188, 305
SetI	ASST	7 cut(s)	248, 282, 288, 404, 486, 620, 688
SfaNI	GCATC	1 cut(s)	564
Sse9I	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
SsiI	CCGC	6 cut(s)	67, 179, 198, 267, 521, 694
SspMI	CTAG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	664
TaiI	ACGT	2 cut(s)	248, 486
TaqI	TCGA	4 cut(s)	192, 309, 423, 636
TaqII	GACCGA	2 cut(s)	193, 735
TasI	AATT	7 cut(s)	47, 92, 454, 542, 586, 638, 675
TauI	GCSGC	2 cut(s)	269, 524
TfiI	GAWTC	2 cut(s)	166, 707
Tru1I	TTAA	3 cut(s)	90, 125, 236
Tru9I	TTAA	3 cut(s)	90, 125, 236
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	3 cut(s)	220, 686, 751
TseI	GCWGC	2 cut(s)	228, 550
Tsp45I	GTSAC	3 cut(s)	220, 686, 751
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	4 cut(s)	92, 542, 638, 675
XceI	RCATGY	1 cut(s)	378
XmiI	GTMKAC	2 cut(s)	106, 156
XspI	CTAG	1 cut(s)	582
ZraI	GACGTC	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.