Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

15570322 .. 15574461

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCTGCCAATACCAAGAAAACAATGTCCATCTTGGTCCCTGAGATGATGGCTGCTTGTGTGCTATTTTCTTTCGTGTTCATTGGAATCTTATTAATACACTACCTCATCCTGTTTGTCCGATCAACGGCGGACGATGTGTCCGAACTTGCATATCCCCATTTTCGGATCGACTCAGCTGCCATGTTCGAACTGGAGACGACTGACTACGATTTGAGTGTGACATGGAGCTTTACACTCGTCACTTCATACCCTAATTATGGAAAGCTAGCCATTTTCGACCGTGTCCGACCATTCGTTTACTACTGCCCCAAAGGCTACATGTATTATGGGGATGAGTACAAGTACTCTCTGGCAAAGACGAAGTTGCCTCCTTTTTTTTTATGTACGGAGGGAACCAAACCCAGCTCGATTTCAAGGTCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

6.1

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	3 cut(s)	341, 347, 388
AfiI	CCNNNNNNNGG	3 cut(s)	127, 165, 260
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	417
AhdI	GACNNNNNGTC	1 cut(s)	139
AluBI	AGCT	4 cut(s)	179, 231, 268, 408
AluI	AGCT	4 cut(s)	179, 231, 268, 408
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	53, 179
AseI	ATTAAT	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	40, 166
BccI	CCATC	2 cut(s)	38, 43
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	54, 180
BlsI	GCNGC	2 cut(s)	55, 181
BmcAI	AGTACT	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	39, 397
BmtI	GCTAGC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 165, 260
Bse1I	ACTGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	108, 340
BseLI	CCNNNNNNNGG	3 cut(s)	127, 165, 260
BseMII	CTCAG	2 cut(s)	33, 189
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	40, 166
BseYI	CCCAGC	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	127, 165, 260
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	122, 168
BspACI	CCGC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	34, 188
BspLI	GGNNCC	2 cut(s)	39, 397
BspOI	GCTAGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	122, 168
Bst4CI	ACNGT	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	6, 270
BstDEI	CTNAG	2 cut(s)	42, 175
BstF5I	GGATG	2 cut(s)	108, 340
BstKTI	GATC	2 cut(s)	125, 171
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	122, 168
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	40, 166
BtsCI	GGATG	2 cut(s)	108, 340
Cac8I	GCNNGC	2 cut(s)	6, 270
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	340, 346, 387
CviAII	CATG	3 cut(s)	184, 225, 322
CviJI	RGCY	7 cut(s)	53, 179, 231, 268, 272, 318, 408
CviKI_1	RGCY	7 cut(s)	53, 179, 231, 268, 272, 318, 408
CviQI	GTAC	3 cut(s)	340, 346, 387
DdeI	CTNAG	2 cut(s)	42, 175
DpnI	GATC	2 cut(s)	124, 170
DpnII	GATC	2 cut(s)	122, 168
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	3 cut(s)	187, 228, 325
FaiI	YATR	8 cut(s)	154, 185, 226, 250, 261, 323, 330, 385
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	183, 224, 321
Fnu4HI	GCNGC	2 cut(s)	54, 180
FokI	GGATG	2 cut(s)	95, 347
Fsp4HI	GCNGC	2 cut(s)	54, 180
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	54, 180
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	187, 228, 325
HinfI	GANTC	2 cut(s)	87, 173
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	122, 145, 168, 290, 424
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	42, 175
Hsp92II	CATG	3 cut(s)	187, 228, 325
Kzo9I	GATC	2 cut(s)	122, 168
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	18, 54, 125, 179, 338, 418
Lsp1109I	GCAGC	2 cut(s)	40, 166
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	220, 241
MalI	GATC	2 cut(s)	124, 170
MboI	GATC	2 cut(s)	122, 168
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	313, 402
MnlI	CCTC	3 cut(s)	116, 381, 385
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	2 cut(s)	122, 168
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	187, 228, 325
NlaIV	GGNNCC	2 cut(s)	39, 397
NmuCI	GTSAC	2 cut(s)	220, 241
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	189
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	55, 181
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	321
PshBI	ATTAAT	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	39, 397
PspPI	GGNCC	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	341, 347, 388
RsaNI	GTAC	3 cut(s)	340, 346, 387
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	54, 180
Sau3AI	GATC	2 cut(s)	122, 168
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	167
SetI	ASST	6 cut(s)	108, 181, 233, 270, 410, 422
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	4 cut(s)	171, 189, 279, 410
TasI	AATT	1 cut(s)	256
TatI	WGTACW	2 cut(s)	339, 345
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	2 cut(s)	220, 241
TseI	GCWGC	2 cut(s)	53, 179
Tsp45I	GTSAC	2 cut(s)	220, 241
TspDTI	ATGAA	2 cut(s)	70, 237
TspGWI	ACGGA	1 cut(s)	404
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	95
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.