Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

32489020 .. 32489724

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAAAAAATGCAGGCACTCCGAGCTGTTCTTGATCCTCTTCTTCCGTCCCACAAAGAATCGGACGGATATTTGCGAATTTGTAGGCGGATGATCTTCTGTTGTGTGCTGTTTTCTTTCGTGTTCATTGGAATCTTATTAGTATACTCCTTCATCCGGTATATCGAATCATCGCTGTTGGCGGACGACGAGTCCGATGTTGCATATCCCAATTTCCGGATCGACTCAGCTACCGTGTTCGAACTGGAGACGACTGAGTACGATTTGAGTGCGACGTGGAACTTTACGCTCGTCGCTTCATACCCTAATTATGGAAAGCTAGCCATTTTCGACCGTGTCCGAGCATTCGTCTACTACTGCCCCAAAGACTACATGTATTTTGGGGATAAGTACAAGTACGCTCTCGCAAAGAAGCAGTTGCCTCCTTTCTTTATGTACGGAGGGAACGAAACCCGGCTTGATTTCAGGGTCGGAGTAATTGGGGCTCCTGTCAGCCCTGACGAAGCCAGACAAATCTCGGTGGGGAAGACTGTGGTTGGGTCAGTGAAATTTGGGTTGATGCTGATGACTCCGCATAAAAACACGACCGATGACACGAACGGGTTTGTTCGGTTTTGTGAACCCATTGAATTCGTATTTTCCTCCCGTACTAATAACACCGGGGTTTTTACAGGTCAGTCAAGGGCATGCCATTTTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

234

Amino Acids

26.72

Weight (kDa)

7.56

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	144, 351
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	3 cut(s)	88, 182, 572
AclWI	GGATC	2 cut(s)	29, 227
AcsI	RAATTY	3 cut(s)	78, 548, 629
AfaI	GTAC	5 cut(s)	260, 392, 398, 437, 649
AfiI	CCNNNNNNNGG	3 cut(s)	156, 216, 311
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	629
AhdI	GACNNNNNGTC	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	3 cut(s)	26, 230, 319
AluI	AGCT	3 cut(s)	26, 230, 319
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	29, 227
Aor13HI	TCCGGA	1 cut(s)	216
ApoI	RAATTY	3 cut(s)	78, 548, 629
AsuC2I	CCSGG	2 cut(s)	454, 661
AsuII	TTCGAA	1 cut(s)	240
AsuNHI	GCTAGC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	533
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcnI	CCSGG	2 cut(s)	454, 661
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	454, 661
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	454, 661
BmsI	GCATC	2 cut(s)	549, 688
BmtI	GCTAGC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	240
BpuMI	CCSGG	2 cut(s)	454, 661
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	2 cut(s)	156, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 216, 311
Bse1I	ACTGG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	96, 153
BseLI	CCNNNNNNNGG	3 cut(s)	156, 216, 311
BseMII	CTCAG	2 cut(s)	240, 246
BseNI	ACTGG	1 cut(s)	249
Bsh1285I	CGRYCG	2 cut(s)	334, 588
BsiEI	CGRYCG	2 cut(s)	334, 588
BsiSI	CCGG	4 cut(s)	157, 217, 454, 660
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	156, 216, 311
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	34, 93, 219
BspACI	CCGC	3 cut(s)	88, 182, 572
BspCNI	CTCAG	2 cut(s)	239, 247
BspEI	TCCGGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	486
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	29, 227
BspT104I	TTCGAA	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	3 cut(s)	34, 93, 219
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	235, 335, 532
Bst6I	CTCTTC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	15, 321, 688
BstDEI	CTNAG	2 cut(s)	226, 255
BstF5I	GGATG	2 cut(s)	96, 153
BstKTI	GATC	3 cut(s)	37, 96, 222
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	34, 93, 219
BstMCI	CGRYCG	2 cut(s)	334, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	2 cut(s)	376, 690
BstSCI	CCNGG	2 cut(s)	452, 659
BstV2I	GAAGAC	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	96, 153
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	15, 321, 688
Csp6I	GTAC	5 cut(s)	259, 391, 397, 436, 648
CviAII	CATG	2 cut(s)	373, 687
CviJI	RGCY	8 cut(s)	26, 230, 319, 323, 457, 485, 495, 506
CviKI_1	RGCY	8 cut(s)	26, 230, 319, 323, 457, 485, 495, 506
CviQI	GTAC	5 cut(s)	259, 391, 397, 436, 648
DdeI	CTNAG	2 cut(s)	226, 255
DpnI	GATC	3 cut(s)	36, 95, 221
DpnII	GATC	3 cut(s)	34, 93, 219
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	103, 197
Eco24I	GRGCYC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	376, 690
FaiI	YATR	9 cut(s)	145, 162, 205, 301, 312, 374, 434, 576, 688
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	372, 686
FblI	GTMKAC	2 cut(s)	144, 351
FokI	GGATG	2 cut(s)	103, 140
FriOI	GRGCYC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	266
HapII	CCGG	4 cut(s)	157, 217, 454, 660
Hin1II	CATG	2 cut(s)	376, 690
HinfI	GANTC	6 cut(s)	59, 132, 167, 191, 224, 568
HpaII	CCGG	4 cut(s)	157, 217, 454, 660
Hpy166II	GTNNAC	3 cut(s)	145, 352, 620
Hpy188I	TCNGA	5 cut(s)	23, 64, 196, 341, 473
Hpy188III	TCNNGA	2 cut(s)	32, 217
Hpy8I	GTNNAC	3 cut(s)	145, 352, 620
Hpy99I	CGWCG	3 cut(s)	191, 277, 296
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	235, 335, 532
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	13, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	226, 255
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	376, 690
Kpn2I	TCCGGA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	34, 93, 219
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	2 cut(s)	549, 688
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	275
MalI	GATC	3 cut(s)	36, 95, 221
MboI	GATC	3 cut(s)	34, 93, 219
MboII	GAAGA	4 cut(s)	32, 35, 88, 538
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	6 cut(s)	78, 211, 307, 477, 548, 629
MlyI	GAGTC	3 cut(s)	200, 218, 562
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	48, 432, 434, 652
MroI	TCCGGA	1 cut(s)	216
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	696
MspI	CCGG	4 cut(s)	157, 217, 454, 660
MspR9I	CCNGG	2 cut(s)	454, 661
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	2 cut(s)	454, 661
NdeII	GATC	3 cut(s)	34, 93, 219
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	376, 690
NlaIV	GGNNCC	1 cut(s)	486
NspI	RCATGY	2 cut(s)	376, 690
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	690
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 444
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	59, 132, 167
PflFI	GACNNNGTC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	199, 218, 562
PpsI	GAGTC	3 cut(s)	199, 218, 562
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	486
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	5 cut(s)	260, 392, 398, 437, 649
RsaNI	GTAC	5 cut(s)	259, 391, 397, 436, 648
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	703
Sau3AI	GATC	3 cut(s)	34, 93, 219
SchI	GAGTC	3 cut(s)	200, 218, 562
ScrFI	CCNGG	2 cut(s)	454, 661
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	5 cut(s)	28, 232, 278, 321, 676
SfaNI	GCATC	2 cut(s)	549, 688
SfuI	TTCGAA	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	696
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	6 cut(s)	78, 211, 307, 477, 548, 629
SsiI	CCGC	3 cut(s)	88, 182, 572
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	452, 659
TaaI	ACNGT	3 cut(s)	235, 335, 532
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	4 cut(s)	165, 222, 240, 330
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	6 cut(s)	78, 211, 307, 477, 548, 629
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	59, 132, 167
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TscAI	CASTG	1 cut(s)	549
TspDTI	ATGAA	4 cut(s)	17, 115, 142, 288
TspGWI	ACGGA	3 cut(s)	36, 81, 453
TspRI	CASTG	1 cut(s)	549
Tth111I	GACNNNGTC	1 cut(s)	335
XapI	RAATTY	3 cut(s)	78, 548, 629
XceI	RCATGY	2 cut(s)	376, 690
XmiI	GTMKAC	2 cut(s)	144, 351
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.