Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

32668857 .. 32671078

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTACTGTGGGTTTCTTCTTCTTTGCGCAATCCTCCTCGTCAGTACGAAATCAAAGACAACAAAGACCGTGAGAAGTACATATTTCTCACTATATTCCTTGTGGGTATACCCTTCGTCCTGATTATAAGCTACGTCGTGTACTTTAACTTCTTGGACTACAAGATGAATCCTCAAAGACCCCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGATTAACTGCCACGTGGAACATCACCTTCCTCGCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTCGTCCTTCTATCATGGAGACAAGAAAGGCGTGCTCTACTGGGACGGGAGAACTAAGACGACACGCATTACCTCAATCGCAACCACGACGTTGTGTAAGCCATTCTTCCTGGACAAAGTAGGGAACCAGACCACCCATGTCAATTTCAAACTCGCAGTAGTGAGTAAGGACGTCGACTGTTTCTTGGCGAAGGAGATCTCAGAGGGAGCGGCTCGTGGTGGCAAAGTCAAATTCGGGCTAGGCATCAGTCTTTTGTTTGATTATAGAATTAAGTTTTGGAGCCTGCGAGGTCCCGGTGAACGACGAGCGCGACCGCAAGAAAAGAGGTCGTCGAAGAACGTCACTGAGGAGCAAATCGCAGAGTACTTGGCTAAGAAGGCACAGAAAAAGGCCGCTCGAGTAGCTAAGAAGCTAAAATTCAAAACGGTTTCGGGTTATTCCAATGATTCGAATCCCTCTACTGATTCCAATCTGAACGCGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

260

Amino Acids

29.36

Weight (kDa)

9.76

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AatII	GACGTC	1 cut(s)	468
Acc16I	TGCGCA	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	270
AccBSI	CCGCTC	2 cut(s)	503, 689
AccI	GTMKAC	2 cut(s)	109, 468
AccII	CGCG	2 cut(s)	604, 773
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	5 cut(s)	201, 249, 503, 608, 687
AcsI	RAATTY	2 cut(s)	524, 710
AcvI	CACGTG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	465
AfaI	GTAC	4 cut(s)	47, 80, 143, 659
AgsI	TTSAA	2 cut(s)	442, 715
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AluBI	AGCT	3 cut(s)	132, 698, 706
AluI	AGCT	3 cut(s)	132, 698, 706
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	214, 306
Ama87I	CYCGRG	1 cut(s)	690
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	684
ApoI	RAATTY	2 cut(s)	524, 710
AspLEI	GCGC	2 cut(s)	30, 604
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	229, 602
AsuII	TTCGAA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	584
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BauI	CACGAG	1 cut(s)	507
BbrPI	CACGTG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	2 cut(s)	214, 306
BfaI	CTAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	3 cut(s)	249, 504, 687
BlsI	GCNGC	3 cut(s)	250, 505, 688
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	404, 588
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	3 cut(s)	419, 575, 586
BmrFI	CCNGG	2 cut(s)	404, 588
BmrI	ACTGGG	2 cut(s)	178, 343
BmsI	GCATC	1 cut(s)	546
BmuI	ACTGGG	2 cut(s)	178, 343
Bpu14I	TTCGAA	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	228
BsaBI	GATNNNNATC	2 cut(s)	744, 762
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	184, 338
Bse8I	GATNNNNATC	2 cut(s)	744, 762
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	268
BseJI	GATNNNNATC	2 cut(s)	744, 762
BseMII	CTCAG	2 cut(s)	507, 630
BseNI	ACTGG	2 cut(s)	184, 338
BseRI	GAGGAG	2 cut(s)	27, 656
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	2 cut(s)	604, 773
Bsh1285I	CGRYCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	686
BsiEI	CGRYCG	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	2 cut(s)	213, 588
BslFI	GGGAC	2 cut(s)	350, 570
BsmAI	GTCTC	2 cut(s)	214, 306
BsmFI	GGGAC	2 cut(s)	350, 570
BsnI	GGCC	1 cut(s)	686
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	690
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	192, 489
BspACI	CCGC	5 cut(s)	201, 249, 503, 608, 687
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	2 cut(s)	506, 631
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	2 cut(s)	604, 773
BspLI	GGNNCC	3 cut(s)	419, 575, 586
BspMI	ACCTGC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	214
BsrBI	CCGCTC	2 cut(s)	503, 689
BsrI	ACTGG	2 cut(s)	184, 338
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	192, 489
BssNAI	GTATAC	1 cut(s)	110
BssNI	GRCGYC	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	9, 71, 473, 721
BstACI	GRCGYC	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	326, 578
BstDEI	CTNAG	5 cut(s)	348, 493, 639, 666, 699
BstFNI	CGCG	2 cut(s)	604, 773
BstHHI	GCGC	2 cut(s)	30, 604
BstKTI	GATC	2 cut(s)	195, 492
BstMAI	GTCTC	2 cut(s)	214, 306
BstMBI	GATC	2 cut(s)	192, 489
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 695
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	402, 586
BstUI	CGCG	2 cut(s)	604, 773
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BstZ17I	GTATAC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	686
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	326, 578
CfoI	GCGC	2 cut(s)	30, 604
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	46, 79, 142, 658
CviAII	CATG	2 cut(s)	308, 431
CviJI	RGCY	9 cut(s)	132, 394, 506, 532, 576, 665, 686, 698, 706
CviKI_1	RGCY	9 cut(s)	132, 394, 506, 532, 576, 665, 686, 698, 706
CviQI	GTAC	4 cut(s)	46, 79, 142, 658
DdeI	CTNAG	5 cut(s)	348, 493, 639, 666, 699
DpnI	GATC	2 cut(s)	194, 491
DpnII	GATC	2 cut(s)	192, 489
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	584
Eco72I	CACGTG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	311, 434
FaiI	YATR	7 cut(s)	83, 95, 110, 128, 309, 432, 558
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	2 cut(s)	350, 570
FatI	CATG	2 cut(s)	307, 430
FblI	GTMKAC	2 cut(s)	109, 468
Fnu4HI	GCNGC	3 cut(s)	249, 504, 687
Fsp4HI	GCNGC	3 cut(s)	249, 504, 687
FspBI	CTAG	1 cut(s)	533
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	2 cut(s)	29, 603
GluI	GCNGC	3 cut(s)	249, 504, 687
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	2 cut(s)	213, 588
HhaI	GCGC	2 cut(s)	30, 604
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	311, 434
Hin6I	GCGC	2 cut(s)	28, 602
HinP1I	GCGC	2 cut(s)	28, 602
HincII	GTYRAC	2 cut(s)	277, 469
HindII	GTYRAC	2 cut(s)	277, 469
HinfI	GANTC	6 cut(s)	169, 197, 293, 740, 745, 758
HpaII	CCGG	2 cut(s)	213, 588
HphI	GGTGA	2 cut(s)	229, 602
Hpy166II	GTNNAC	5 cut(s)	110, 142, 277, 469, 593
Hpy188I	TCNGA	4 cut(s)	192, 285, 496, 768
Hpy188III	TCNNGA	2 cut(s)	121, 213
Hpy8I	GTNNAC	5 cut(s)	110, 142, 277, 469, 593
Hpy99I	CGWCG	6 cut(s)	140, 385, 470, 600, 628, 778
HpyAV	CCTTC	5 cut(s)	124, 250, 310, 478, 664
HpyCH4III	ACNGT	4 cut(s)	9, 71, 473, 721
HpyCH4IV	ACGT	6 cut(s)	135, 227, 383, 465, 633, 776
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 695
HpyF3I	CTNAG	5 cut(s)	348, 493, 639, 666, 699
HpySE526I	ACGT	6 cut(s)	135, 227, 383, 465, 633, 776
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	311, 434
HspAI	GCGC	2 cut(s)	28, 602
Kpn2I	TCCGGA	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	192, 489
LmnI	GCTCC	3 cut(s)	500, 573, 643
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	6 cut(s)	135, 227, 383, 465, 633, 776
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	2 cut(s)	194, 491
MbiI	CCGCTC	2 cut(s)	503, 689
MboI	GATC	2 cut(s)	192, 489
MboII	GAAGA	4 cut(s)	9, 12, 391, 640
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	436, 524, 561, 710
MlyI	GAGTC	2 cut(s)	191, 287
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	3 cut(s)	147, 218, 564
MspI	CCGG	2 cut(s)	213, 588
MspR9I	CCNGG	2 cut(s)	404, 588
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	2 cut(s)	604, 773
MwoI	GCNNNNNNNGC	2 cut(s)	671, 695
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	2 cut(s)	192, 489
NlaIII	CATG	2 cut(s)	311, 434
NlaIV	GGNNCC	3 cut(s)	419, 575, 586
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	634
NsbI	TGCGCA	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PfeI	GAWTC	4 cut(s)	169, 740, 745, 758
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	250, 505, 688
PleI	GAGTC	2 cut(s)	191, 287
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	191, 287
Ppu21I	YACGTR	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	3 cut(s)	419, 575, 586
PspPI	GGNCC	1 cut(s)	584
PspPPI	RGGWCCY	1 cut(s)	584
PspXI	VCTCGAGB	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	4 cut(s)	47, 80, 143, 659
RsaNI	GTAC	4 cut(s)	46, 79, 142, 658
SalI	GTCGAC	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	147, 218, 564
SatI	GCNGC	3 cut(s)	249, 504, 687
Sau3AI	GATC	2 cut(s)	192, 489
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	2 cut(s)	191, 287
ScrFI	CCNGG	2 cut(s)	404, 588
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	4 cut(s)	436, 524, 561, 710
SsiI	CCGC	5 cut(s)	201, 249, 503, 608, 687
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	402, 586
TaaI	ACNGT	4 cut(s)	9, 71, 473, 721
TaiI	ACGT	6 cut(s)	138, 230, 386, 468, 636, 779
TaqI	TCGA	6 cut(s)	195, 291, 468, 626, 691, 743
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	436, 524, 561, 710
TatI	WGTACW	3 cut(s)	78, 141, 657
TauI	GCSGC	3 cut(s)	251, 506, 689
TfiI	GAWTC	4 cut(s)	169, 740, 745, 758
Tru1I	TTAA	3 cut(s)	147, 218, 564
Tru9I	TTAA	3 cut(s)	147, 218, 564
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	524, 710
XhoI	CTCGAG	1 cut(s)	690
XmiI	GTMKAC	2 cut(s)	109, 468
XspI	CTAG	1 cut(s)	533
ZraI	GACGTC	1 cut(s)	466
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.