Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

32683271 .. 32684638

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCAGAGTTTCGTCGTCTTCCTCCCGTCTCGCCCACCGACTGGTACTCAGACGACCGTCCTCCGGCAAGCGACTCAGACCGCTTGATTGGCGCTGCGTTAATGGCGAGCTTGCTTATCGGGATCCTCGCCATCTGGTTGGTGTACGACTACAAGTTGGATCGCGCCTTCAGTCCTGAATTACCCTGTTTCCAGATTCATTCGGCTTCGGTGTCGGGACTGAGCGCCACCGAGTTAATTACCTGGTGGAACATCACCCTCCTCACCACAAACCCTAACCGCAACCTGGGCGTCGACTATCGCTACATATTCCCCTCCCTCTATTATGGAGACCAGGAGGATTATTTCAACAGCCCACGCTGGTTTAAGAACAATCAGATTGTGGCAACCAAAAAGTTGTCTCGCTCATTCTTCTTGGACAAGGGAGGGAACCAAACCTCCCTTGTCAATTTCAATCTAGTCGCAGTATTGAGTGAGGACGTCGACTATGAGTTGGCTGAGCAAATCTCAGAGGAGCTGGCTCTTCGTGGCTCAGTCAAACTTGGGCTCTATATCAAGCTTGAGTTTGGTTATAGAACTGAGGAGAATTATTTGCACTTCAGGGGGCCCATGCAATGTAGCTTCTTCTGTAATCAGCGTCGTCGCTTATCGTCGTGGGAGAGTCGGGATCGTCGTTGCAGATCGAAGGTTGAAGAGTCGGGCTTGGCATTGTGCAGATCGAAGGCGTCGGCAGGCGGCGTTGGTAGGCTGAGGATCGAGCTCGGCGTTGTGCAGATCAAAGGCGTTGGTGGGTGGAGCGGCGTGGTAGTTGTTGGTCGGCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

276

Amino Acids

31.25

Weight (kDa)

8.76

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	798
AccI	GTMKAC	2 cut(s)	294, 483
AccII	CGCG	1 cut(s)	165
AciI	CCGC	5 cut(s)	82, 280, 735, 798, 820
AclWI	GGATC	5 cut(s)	118, 131, 168, 675, 761
AcuI	CTGAAG	2 cut(s)	154, 583
AcyI	GRCGYC	3 cut(s)	291, 480, 725
AfaI	GTAC	2 cut(s)	47, 146
AfiI	CCNNNNNNNGG	3 cut(s)	42, 64, 286
AgsI	TTSAA	3 cut(s)	349, 454, 692
AjnI	CCWGG	3 cut(s)	242, 285, 333
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	111, 517, 559, 621, 760
AluI	AGCT	5 cut(s)	111, 517, 559, 621, 760
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	34, 324, 405
AlwI	GGATC	5 cut(s)	118, 131, 168, 675, 761
AoxI	GGCC	1 cut(s)	605
ApaI	GGGCCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	95
AspLEI	GCGC	3 cut(s)	95, 167, 227
AspS9I	GGNCC	2 cut(s)	605, 606
AsuHPI	GGTGA	2 cut(s)	247, 256
BaeGI	GKGCMC	1 cut(s)	609
BamHI	GGATCC	1 cut(s)	123
BanII	GRGCYC	3 cut(s)	549, 609, 762
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	762
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	244, 287, 335
BcoDI	GTCTC	3 cut(s)	34, 324, 405
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	2 cut(s)	96, 228
BisI	GCNGC	4 cut(s)	96, 736, 799, 821
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	4 cut(s)	97, 737, 800, 822
Bme1390I	CCNGG	3 cut(s)	244, 287, 335
BmgT120I	GGNCC	2 cut(s)	605, 606
BmiI	GGNNCC	4 cut(s)	125, 431, 606, 607
BmrFI	CCNGG	3 cut(s)	244, 287, 335
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
Bpu10I	CCTNAGC	1 cut(s)	749
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	581
BsaHI	GRCGYC	3 cut(s)	291, 480, 725
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 64, 286
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	3 cut(s)	244, 287, 335
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	42, 64, 286
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	8 cut(s)	63, 90, 212, 489, 522, 546, 570, 740
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	251, 527, 596
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	733, 791
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	607
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	42, 64, 286
BsmAI	GTCTC	3 cut(s)	34, 324, 405
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	607
Bso31I	GGTCTC	1 cut(s)	324
Bsp120I	GGGCCC	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	549, 609, 762
Bsp143I	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	5 cut(s)	82, 280, 735, 798, 820
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	8 cut(s)	62, 89, 213, 490, 521, 545, 571, 741
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	4 cut(s)	125, 431, 606, 607
BspPI	GGATC	5 cut(s)	118, 131, 168, 675, 761
BspQI	GCTCTTC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	798
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
BssNI	GRCGYC	3 cut(s)	291, 480, 725
Bst2UI	CCWGG	3 cut(s)	244, 287, 335
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	528, 687
BstACI	GRCGYC	3 cut(s)	291, 480, 725
BstC8I	GCNNGC	5 cut(s)	70, 109, 113, 519, 733
BstDEI	CTNAG	8 cut(s)	49, 76, 221, 498, 508, 532, 579, 749
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	2 cut(s)	96, 228
BstHHI	GCGC	3 cut(s)	95, 167, 227
BstKTI	GATC	7 cut(s)	126, 163, 670, 683, 719, 756, 777
BstMAI	GTCTC	3 cut(s)	34, 324, 405
BstMBI	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 104, 288
BstNI	CCWGG	3 cut(s)	244, 287, 335
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	3 cut(s)	242, 285, 333
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	607
Cac8I	GCNNGC	5 cut(s)	70, 109, 113, 519, 733
CfoI	GCGC	3 cut(s)	95, 167, 227
Cfr13I	GGNCC	2 cut(s)	605, 606
CseI	GACGC	3 cut(s)	280, 626, 714
CsiI	ACCWGGT	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	46, 145
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	2 cut(s)	46, 145
DdeI	CTNAG	8 cut(s)	49, 76, 221, 498, 508, 532, 579, 749
DpnI	GATC	7 cut(s)	125, 162, 669, 682, 718, 755, 776
DpnII	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
Eam1104I	CTCTTC	2 cut(s)	528, 687
EarI	CTCTTC	2 cut(s)	528, 687
Ecl136II	GAGCTC	1 cut(s)	760
Eco24I	GRGCYC	3 cut(s)	549, 609, 762
Eco31I	GGTCTC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	154, 583
EcoICRI	GAGCTC	1 cut(s)	760
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	3 cut(s)	242, 285, 333
EcoT38I	GRGCYC	3 cut(s)	549, 609, 762
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	613
FaiI	YATR	6 cut(s)	308, 327, 489, 552, 573, 611
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	609
FblI	GTMKAC	2 cut(s)	294, 483
Fnu4HI	GCNGC	4 cut(s)	96, 736, 799, 821
FriOI	GRGCYC	3 cut(s)	549, 609, 762
Fsp4HI	GCNGC	4 cut(s)	96, 736, 799, 821
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	3 cut(s)	94, 166, 226
GluI	GCNGC	4 cut(s)	96, 736, 799, 821
HaeII	RGCGCY	2 cut(s)	96, 228
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	3 cut(s)	280, 626, 714
HhaI	GCGC	3 cut(s)	95, 167, 227
Hin1I	GRCGYC	3 cut(s)	291, 480, 725
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	3 cut(s)	93, 165, 225
HinP1I	GCGC	3 cut(s)	93, 165, 225
HincII	GTYRAC	2 cut(s)	295, 484
HindII	GTYRAC	2 cut(s)	295, 484
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	4 cut(s)	74, 196, 661, 695
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	247, 256
Hpy166II	GTNNAC	3 cut(s)	145, 295, 484
Hpy188I	TCNGA	5 cut(s)	7, 52, 79, 378, 511
Hpy188III	TCNNGA	5 cut(s)	121, 176, 193, 216, 665
Hpy8I	GTNNAC	3 cut(s)	145, 295, 484
Hpy99I	CGWCG	8 cut(s)	18, 296, 485, 642, 645, 655, 675, 730
HpyAV	CCTTC	3 cut(s)	178, 679, 715
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	5 cut(s)	595, 613, 678, 714, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 104, 288
HpyF3I	CTNAG	8 cut(s)	49, 76, 221, 498, 508, 532, 579, 749
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	3 cut(s)	291, 480, 725
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	3 cut(s)	93, 165, 225
Kzo9I	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	514, 795
Lsp1109I	GCAGC	1 cut(s)	82
MabI	ACCWGGT	1 cut(s)	242
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	480
MalI	GATC	7 cut(s)	125, 162, 669, 682, 718, 755, 776
MbiI	CCGCTC	1 cut(s)	798
MboI	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
MboII	GAAGA	5 cut(s)	11, 403, 515, 616, 704
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	3 cut(s)	549, 609, 762
MluCI	AATT	4 cut(s)	179, 237, 448, 586
MlyI	GAGTC	3 cut(s)	68, 670, 704
MmeI	TCCRAC	1 cut(s)	138
MseI	TTAA	3 cut(s)	101, 236, 366
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	3 cut(s)	244, 287, 335
MvaI	CCWGG	3 cut(s)	244, 287, 335
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	90, 104, 288
NdeII	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	4 cut(s)	125, 431, 606, 607
NmeAIII	GCCGAG	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	670, 762
PfeI	GAWTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	97, 737, 800, 822
PleI	GAGTC	3 cut(s)	68, 669, 703
PpsI	GAGTC	3 cut(s)	68, 669, 703
PshAI	GACNNNNGTC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	242, 285, 333
PspGI	CCWGG	3 cut(s)	242, 285, 333
PspN4I	GGNNCC	4 cut(s)	125, 431, 606, 607
PspOMI	GGGCCC	1 cut(s)	605
PspPI	GGNCC	2 cut(s)	605, 606
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	2 cut(s)	47, 146
RsaNI	GTAC	2 cut(s)	46, 145
SacI	GAGCTC	1 cut(s)	762
SalI	GTCGAC	2 cut(s)	293, 482
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	101, 236, 366
SatI	GCNGC	4 cut(s)	96, 736, 799, 821
Sau3AI	GATC	7 cut(s)	123, 160, 667, 680, 716, 753, 774
Sau96I	GGNCC	2 cut(s)	605, 606
SchI	GAGTC	3 cut(s)	68, 670, 704
ScrFI	CCNGG	3 cut(s)	244, 287, 335
SduI	GDGCHC	3 cut(s)	549, 609, 762
SexAI	ACCWGGT	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	179, 237, 448, 586
SsiI	CCGC	5 cut(s)	82, 280, 735, 798, 820
SspMI	CTAG	1 cut(s)	458
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	3 cut(s)	242, 285, 333
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	5 cut(s)	294, 483, 683, 719, 756
TasI	AATT	4 cut(s)	179, 237, 448, 586
TauI	GCSGC	3 cut(s)	738, 801, 823
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	101, 236, 366
Tru9I	TTAA	3 cut(s)	101, 236, 366
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	2 cut(s)	294, 483
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.